Roseobacter denitrificans: RD1_2746
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Entry
RD1_2746 CDS
T00376
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rde
Roseobacter denitrificans
Pathway
rde03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RD1_2746 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rde03400
]
RD1_2746 (mfd)
Enzymes [BR:
rde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RD1_2746 (mfd)
DNA repair and recombination proteins [BR:
rde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RD1_2746 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
MFD_D3
Cas3-like_C_2
AAA_16
AAA_30
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABG32279
RoseoBase:
RD1_2746
UniProt:
Q165R4
LinkDB
All DBs
Position
complement(2616249..2619713)
Genome browser
AA seq
1154 aa
AA seq
DB search
MTAHTHITISGVPEGYDARVLLDEVAKSSAPVMHIARDDKRLAALQAALRFMAPDMPVVV
FPGWDCLPYDRISPNADISAQRMATLAALIHGMPERFILLTTLNAASQKIPARDLLKDAA
FSARVGSRIDEKALRNFLVRMGFVQSPTVTEPGDYAVRGGIIDIFPPGDMGPVRLDLFGD
VLDGARRFDSATQRTTEKLDLVELAPVSEIILDEAAITRFRQNYRIEFGAAGTDDPLYEA
ISAGRKHQGAEHWLPFFHDGLETLFDYLPQASVSLDDQITAAREARWDSIADQYETRRIA
MSNRSKMDSVYKPCPPEALYLNSAAWDAAVGGRRVLQLAPLPQPTGLNVTDAGARIGRNF
APERQQESLSLFGALADHIKVKMEGGPVLIASYSEGARERLTGLIEDEGLAEAIPVPDAT
RIGKRGLYLAVWALEHGFEAPGLTVISEQDVLGDRLIRSSRRKRRAENFLTETESLSPGD
LIVHVDHGIGRYKGLEVVTAAGAAHECILLEYAESSKLYLPVENIELLSKYGHEEGLLDR
LGGGAWQAKKARLKERIREMADKLIRVAAERALRKAPVLEPPPGMWDAFSARFPYTETDD
QLRAIADVIDDLTSGNPMDRLVCGDVGFGKTEVAMRAAFVAAMSGVQVALIAPTTLLARQ
HYKSFAERFRGFPINVRQLSRFVPTKEANETREGLSRGTVDIVIGTHALLAQGIRFQNLG
LLIIDEEQHFGVTHKERLKQLRTDIHVLTLTATPIPRTLQLSLTGVRDLSIIGTPPVDRL
AIRTYVSEFDTVTLREALLREHYRGGQSFYVVPRISDLPEIEAFLTEQLPELTYVVAHGQ
MAAGELDDRMNAFYDGKFDILLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIRGRVG
RSKTRAYAYLTTKPRARLTATAEKRLRVLSSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GQMRDVGFELYQSMLEEAIAKIRTGELEGLSEADDQWAPQINLGVPVLIPEDYVPDLDVR
LGLYRRLSSLTTKVELEGFAAELIDRFGKLPREVNTLMLVVRIKAMCKRAGIAKLDGGPK
GATIQFHNDKFASPQGLVSFIEDQRGLAKVKDNKIVVRRDWKADADKIKGAFAIARDLAE
KVIAEKKRKKAKAG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgactgcgcacacccatatcacgatctccggcgtgcccgagggctatgatgcccgcgtg
ctgcttgacgaagttgcaaagagcagcgcgccggtgatgcatatcgcgcgtgatgacaaa
cgtctggccgcgctgcaggctgcgctgcgtttcatggccccagatatgcccgtggtggtc
tttccgggctgggattgtctgccctatgatcgcatctcacccaatgcggatatctccgca
cagcggatggcgacgctcgccgcgttgatccacggcatgccggagcggtttatcctgctg
accacgctgaacgccgccagtcagaaaattccggcgcgcgacctgctcaaggatgccgcc
ttcagcgcgcgcgttggcagtcggatcgacgaaaaggccttgcgcaattttctggtgcgc
atgggctttgtgcaaagcccgaccgtcaccgaacccggcgattatgcggtgcgcggtggg
attattgatatttttccacccggcgacatggggcctgtgcggctggatctgttcggggac
gttctggatggcgcgcgccgctttgacagcgccacgcagcgcaccaccgaaaagctggac
ctcgttgagcttgcgccggtctccgagatcattctggatgaggctgccatcacacggttt
cgccagaactaccggatcgaattcggcgcggcaggcacggatgatccgctgtatgaagcc
atcagcgccgggcgcaagcaccaaggggcggaacactggttgccgtttttccacgatggg
ttggagacgctatttgattacttgccacaggcctctgtgtcgctggatgatcagatcacc
gccgcgcgagaggcacgctgggacagcatcgcggatcaatatgaaacgcgccgcattgcc
atgtccaaccgctccaagatggacagtgtgtacaaaccctgcccaccggaggcgctttac
ctcaacagtgccgcttgggacgcagcagttggcgggcggcgcgtgctgcaactggcccca
ttgccacagccgacggggttgaatgtcaccgatgcaggggcgcggatcgggcggaatttt
gcacctgaacgacaacaggaaagcctaagccttttcggggctttggctgatcacattaag
gtaaagatggaaggcggtccggtgctgatcgccagctattcggagggcgcgcgtgaaagg
ctgaccgggctgatcgaagacgaagggctggccgaagcgatcccggtgcccgatgcgaca
cggatcggcaaacgtggcctttacctcgccgtctgggcgttggaacacgggtttgaagcc
cctggcctcacggtcatatccgaacaggacgtgctgggggaccggttgatccgctcgagc
cgccgcaaacgccgcgccgaaaacttcctgaccgaaacggaatcgctcagccccggcgat
ctgattgtccatgtggatcatggtatcgggcgctacaaggggctggaggtcgttacggcg
gcaggggcggcccatgagtgtattctgctggaatacgcggagtcctcgaaactctacctg
cccgttgaaaatattgagcttttgtcgaaatacggccacgaggaagggctgctggatcgt
cttggtggcggggcctggcaggccaagaaagcgcgcctcaaagagcgcatccgcgagatg
gccgacaagctgatccgggttgcagcggaacgcgcgctgcgcaaagcgcccgtgctggaa
ccgccaccgggcatgtgggatgccttcagcgcgcgcttcccctatacggaaaccgatgac
cagctgcgcgccatcgcggatgtgatcgacgatctgacgtcgggcaatccgatggatcgg
ctggtctgcggggatgttgggtttggcaagacagaagtcgcgatgcgcgcggcctttgtg
gcggccatgtcgggcgttcaggtcgcgctgattgcaccgacaactttgctggcacgccag
cactacaagagctttgccgaaaggttccgcggttttccgatcaacgtgcgccagctcagc
cgctttgtcccgaccaaggaggccaatgaaacacgcgagggcttgagccgtggcacggtc
gatatcgtcatcggaacccatgcgctgctggcccagggcatccgttttcaaaacctcgga
ttgctgatcatcgacgaggaacagcattttggcgtaacccacaaggaacgcctgaaacag
ctgcgcacggacatccatgtgctgacgctgaccgcgaccccgatcccgcgcacgctgcaa
ctgagcctcacgggcgtgcgcgacctcagcatcattggcacaccgcccgtggaccgtctg
gcgatccgcacctatgtcagtgaatttgacacggtgaccctgcgcgaggccttgctgcgc
gagcactatcgcggcgggcagtcgttttatgtggtgccacgcatctctgatctgccggag
atcgaggcgttcctgaccgaacaactgcccgaactgacctatgtggtggcgcatgggcag
atggcggcaggtgagcttgatgaccggatgaatgccttttacgacggtaaattcgacatc
ctgctggccacgacgattgttgaatccggtctggatattccaaccgccaatacgatgatc
gtgcatcgggcggatatgtttggtctggcgcagctgtatcagatcagggggcgcgtcggg
cggtcgaaaacccgcgcctatgcctatctgacgacaaagccacgggcgcgtttgacggcg
acggcggaaaaacgtctgcgtgtgctctccagccttgatacgctgggggcagggttcacc
ttggccagccaggatctggacattcgcggcgcgggcaacctgctgggtgaagagcaatcg
ggtcagatgcgcgatgtgggctttgaactttatcaatccatgctcgaagaagcgattgcc
aagattcgcacgggtgaattggaaggactgtcagaggcggacgatcaatgggccccgcag
atcaacctcggcgtgccggtgctgatccccgaagactatgtgccggatctggatgtgcgg
ctggggctttatcgtcgtttgagcagcctcaccaccaaggtcgaactggaagggtttgcc
gccgaattgatcgaccggttcggcaagctgccgcgcgaggtcaacacgttgatgctggtg
gtgcgcatcaaggcgatgtgcaaacgggccgggatcgccaagttggatggcgggccaaag
ggggcaacgatccagtttcacaacgacaaattcgcctcaccgcaggggcttgtgtccttc
atcgaggatcagcgcgggctggccaaggtcaaggacaacaagatcgtcgtgcggcgcgac
tggaaagcggatgccgacaagatcaaaggcgcgtttgccatcgcgcgcgatctcgccgaa
aaggtcatcgccgagaaaaagcgcaagaaagcaaaggcgggctag
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