Roseobacter denitrificans: RD1_2859
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Entry
RD1_2859 CDS
T00376
Name
(GenBank) deoxyribodipyrimidine photo-lyase, putative
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
rde
Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rde03400
]
RD1_2859
Enzymes [BR:
rde01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
RD1_2859
DNA repair and recombination proteins [BR:
rde03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
RD1_2859
Prokaryotic type
RD1_2859
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
Motif
Other DBs
NCBI-ProteinID:
ABG32385
RoseoBase:
RD1_2859
UniProt:
Q165F8
LinkDB
All DBs
Position
2727412..2728818
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AA seq
468 aa
AA seq
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MLHDHGNKVHVGFNRIFHVECLSAASLSGPYLRTVDRTLVLARRSRKGGCTTLGSAVDLR
SRKPKSRQMSQLFPPSHRAALERLTAFVPKAGRDYAARRNYDLGPGNHTHVSTLSPYLRC
RLITESEVVNAVLHRHSPAAAEKFVQEVFWRTYWKGWLELRPAVWTQYQMALDQAWNDVQ
TQAGLRARWENACRGETGIHCFDAWARELVETGYLHNHARMWFASIWIFTLELPWELGAD
FFLRHLLDGDPASNTLGWRWVAGIQTQGKTYLARTSNISKFTENRFHPKWQLAGEAIPRH
APLPPEPRSLPAGDAFDPALRTGFLLHEEDLSPGFFLNMVDPHACGVLQPQTKLGPLESA
PHIAAFRSAALDDVTTRWSERLGPQAPLTSHSDVEAWAKAQNLEQIVTPYAPVGPVATLL
AQASKSDHTPPIIQLMRPYDRMTWPHATRGFFPFKKKLPTFIADIQAA
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
ttgctccacgaccatgggaacaaggttcatgtaggtttcaatcggatctttcatgtggaa
tgcctgtctgctgcgtcgttgtcaggaccatacctgcgaacggttgacagaacattagtg
ttggcgcgcaggagccgcaaggggggctgcacaactttgggttccgctgttgacctgcgt
tcccgcaagcctaagtcgcgccagatgtcacagctatttcccccctcgcatcgtgctgcg
cttgagcggctcacggctttcgttcccaaagcggggcgcgattacgcggcgcgcagaaac
tatgaccttggcccgggaaatcacacgcatgtgtcgaccctatcaccctacctgcgctgt
cggctgatcactgaaagtgaagtcgtcaatgccgtcttgcaccgccacagcccggcggct
gcggaaaaattcgtgcaggaggttttctggcgtacctattggaaaggctggcttgaactg
cgcccggcggtctggacgcagtatcagatggccctcgatcaggcgtggaatgatgtccag
acacaggcaggtctgcgtgcgcgctgggaaaacgcctgtcgtggcgagacggggatccac
tgtttcgatgcatgggcgcgcgagttggtcgagacgggatacctgcacaatcacgcccgg
atgtggtttgcatccatctggattttcacgcttgaattgccatgggaactgggcgcggat
ttctttctgcggcatctgctcgacggggatccggcgtcaaacacattgggctggcggtgg
gtggctggcatccagacccaaggcaaaacctatctggcccgtacgagcaatatatcgaaa
tttaccgaaaatcggtttcaccccaagtggcaactggctggcgaagccattccgcgccat
gcccccctgcccccggaaccccgcagtttaccggcaggggatgcgtttgatcctgcactg
cgcaccggtttcctgctgcatgaagaagacctcagccccggctttttcctcaacatggtt
gacccgcatgcctgcggtgtcctgcagcctcaaaccaaactcggccccctggaaagcgcg
ccccacatcgccgcttttcgcagcgcggcactggatgatgtgacgacccgctggagcgag
cgtctgggcccgcaggcaccgttgacttcgcacagcgatgttgaggcctgggccaaggcg
caaaaccttgagcagatcgtgacgccctatgcgccggtcggacccgttgccacactgctg
gcgcaggcgtcaaaatccgatcacacaccgccgatcatccaactgatgcgcccctatgac
cgaatgacctggccccatgcaacccgtgggttttttccgttcaaaaagaaactgccaacc
ttcatcgccgatattcaggccgcgtga
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