Roseobacter denitrificans: RD1_2872
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Entry
RD1_2872 CDS
T00376
Symbol
glgX
Name
(GenBank) glycogen debranching enzyme
KO
K01214
isoamylase [EC:
3.2.1.68
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00500
Starch and sucrose metabolism
rde01100
Metabolic pathways
rde01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
RD1_2872 (glgX)
Enzymes [BR:
rde01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.68 isoamylase
RD1_2872 (glgX)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CBM_48
Alpha-amylase
DUF5696
Motif
Other DBs
NCBI-ProteinID:
ABG32398
RoseoBase:
RD1_2872
UniProt:
Q165E5
LinkDB
All DBs
Position
complement(2744492..2746588)
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AA seq
698 aa
AA seq
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MDYHFTSGNPTQLGAHHDGQGVNFAVFSAHASAIELCLFTPDGHTETARLALPERSGDIW
HGYLPGLAVGTVYGYRAHGPYAPEQGHRFNPNKLLLDPYTRQLCGAFKDDPALLGYVEGD
AEEDLSFDPRDSAPYVAKSVVRDPAIFPKAGTGPQIPWEETLIYEAHVKGLTAQNDRVPA
DLRGTYDALASDAMLAHFKRLGITAVELLPVHAFVNDSFLLKKGLTNYWGYNTIGFFAPE
PRYVGPAGIAGFQKMVQRLHAAGIEVILDVVYNHTAEGDQRGPTLSFRGLDNASYYRLTD
ADPRFYVNDTGTGNTLNVAHPQVLRMVLDSLRFWVEHMGVDGFRFDLATTLAREPDGFDP
QGGFMDALRQDPVLGGVKLIAEPWDIGPGGYQLGAYPPEFAEWNDAYRDTVRRFWKGDSH
SAQDLAARLLGSAEIFDHRGRRAWSSLNFLAAHDGFTLADTTSYARRHNQANGEGNRDGH
HGNHSDSCGVEGPTTDPDILARRARRQRNMLATLFLSQGTPMLLAGDEMGNSQAGNNNAY
CQDNAIGWVDWQADQAGLFDFVQQLSAFRAAHPVLRQSRFLHGAARVADGRPDVEWSDAT
GAAPDWHDPDLSTFCLMLRGSAEASVDTVGDDAVLVVINRAPDPVKIALPPPPTGQCWQI
GMRTGAAARGKLEAGELVVEAEEVMALILSPMDAPDAW
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggattatcacttcacatccggcaacccgacacagttgggcgcgcatcatgatgggcag
ggcgtcaatttcgcggtcttttctgcgcatgccagtgcgatcgaactgtgcctttttacc
ccagacgggcacacagaaacggcgcgccttgccttgccggaacgcagcggtgatatctgg
cacggctatctgccggggctggcggtgggcacggtttatggctaccgcgcccatgggccg
tatgcgccggagcagggacaccggtttaaccccaacaaacttttgctcgacccctatacc
cggcagctttgcggtgcgtttaaagatgaccccgcgctgcttggctatgtagagggcgac
gcggaagaggatctgtcctttgatccgcgcgactctgccccctacgtggccaaatccgtg
gtccgcgaccccgcgattttccccaaggcgggcacaggtcctcaaatcccatgggaagaa
acgttgatctatgaggcgcatgtcaaaggtctgaccgcgcaaaatgaccgtgttccggcc
gatctgcgcggcacttatgacgccctcgccagcgacgcgatgctggcgcatttcaaacgg
ctcggcatcacggcggttgaactgctgcccgtccatgcctttgtgaatgacagtttttta
cttaagaaaggtctcacaaactattggggttacaatacaatcgggttttttgcgcccgag
ccgcgctatgtcggccctgcaggtatcgctggttttcaaaagatggtacagcgcctgcat
gcagccgggatcgaggtcattctggatgtggtctacaaccacacggccgagggcgatcag
cgcggcccgacgctcagttttcgcggcctcgacaatgcctcatactatcggctgaccgat
gcggacccgcggttttacgtgaatgatacaggcacgggcaacacgctgaacgtagcgcac
ccgcaggtgctgcgcatggtgctcgacagcctgcggttctgggtggagcatatgggtgtc
gacggctttcgtttcgatctggccacgacgctggcgcgcgagccggatgggtttgacccg
cagggagggttcatggatgcactgcgtcaggacccggtgctgggcggggtcaaactgatt
gcggaaccttgggacattggacccggcggctaccagttgggggcttacccgcccgaattc
gccgagtggaacgacgcctatcgcgatacggtgcgccgcttctggaagggcgacagtcac
agcgcgcaggaccttgccgcgcggctgttgggatcggctgagatctttgatcatcggggt
cggcgggcgtggtcctcgctcaactttctggccgcgcatgacgggttcacgctggcggat
acgacaagttatgcaaggcggcacaatcaggcgaacggggagggcaaccgcgacgggcat
cacggcaatcactctgattcttgcggtgtcgaaggccccacaacggatccggatattctg
gcccgccgcgcccgtcgtcagcgcaacatgctggcgacactgttcctgtcgcagggcacg
ccgatgctgctggccggggatgagatgggcaattcgcaggctggcaacaacaatgcctat
tgtcaggacaatgccatcggctgggtcgattggcaggcggatcaggcgggtcttttcgat
tttgtgcaacagctttcagccttcagggctgcgcatccggtcctgcgtcaatcacgtttc
ctgcatggggctgcgcgcgtggccgatggccgcccggatgtggaatggtcagatgccacc
ggggctgcgccggattggcatgacccggatttgtcgaccttttgtctgatgctgcgcgga
tcagccgaagcatcggtcgataccgttggcgatgatgcggtgctggtggtcatcaaccgc
gcgcctgatcctgtgaagatcgcactgccgccgccgcccaccgggcagtgctggcagatt
ggcatgcgcaccggggctgcagcgcgcggcaaattggaagcgggggaactggtggttgaa
gccgaagaggtcatggcgctgatcctgtcgcccatggatgcgcccgatgcgtggtga
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