Roseobacter denitrificans: RD1_2956
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Entry
RD1_2956 CDS
T00376
Symbol
rimK
Name
(GenBank) ribosomal protein S6 modification protein (C terminal domain)
KO
K05844
ribosomal protein S6--L-glutamate ligase [EC:6.3.2.-]
Organism
rde
Roseobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rde03009
]
RD1_2956 (rimK)
Ribosome biogenesis [BR:
rde03009
]
Prokaryotic type
ribosomal protein modification factors
RD1_2956 (rimK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RimK
Rimk_N
Zn_protease
GSH-S_ATP
ATP-grasp_3
ATPgrasp_ST
ATP-grasp
Motif
Other DBs
NCBI-ProteinID:
ABG32477
RoseoBase:
RD1_2956
UniProt:
Q164W6
LinkDB
All DBs
Position
2835732..2837111
Genome browser
AA seq
459 aa
AA seq
DB search
MEKLTFGWEEWVSLPDLGLPAIKAKVDTGARTSALHAHDIEVFGPAKTPKVRFNVHPVSG
RDDISITCSAPLVDRREVTSSNGEAEQRFVISSELHVGGQNWPIEITLTNRASMNSRMLL
GRQALSDHISISPTERHLQPELSYEDYHSASLKKGAPKRALRIAVLSREDNYSTRRLVEV
GEARGHVVEVIDTTRCYMAINTMAPEVHYDGKRLPRYDAVIPRIGASITPYGTAVIRQFE
AIGTYCVNGSAGITASRDKLHAHQVLATKRIGMPSTAFAASPKDTSNLMALVGTAPLIVK
LLESTQGKGVVLAETKKAAESVIDAFRGLKANFLVQDFVKEAAGEDIRCLVIAGKVVAAM
KRTGAEGDFRSNLHRGGSAKVVRITKQERDTAVRAARAFGLGKAGVDLLRATAGPKVLEV
NSSPGFEGIEKATGKDIVGKLYDEIETRVRPQPARKRRS
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctcacgttcggatgggaggaatgggtatctctgcccgacctcggcttgccc
gcaatcaaggccaaggtggacacaggcgcgcgcacctcggcgctgcatgcccatgacatc
gaagtcttcggcccagccaaaacgccaaaagtgcgcttcaacgtgcatccggtgtcgggt
cgtgatgatatttccatcacctgctcggcgccacttgtggaccgcagggaggttacctcc
tcaaatggcgaggccgaacagcggttcgtgatctcttcggaattgcatgttggcggacag
aactggccaatcgagattacgctcacaaaccgcgcctcgatgaattcgcgcatgctgctg
gggcgacaggcgctcagcgatcacatctcgatctcgccgacggaacgtcatctgcaaccc
gaactcagttatgaggactatcacagcgcatcgctgaaaaagggcgcacccaaacgcgcg
ctgcgcatcgcggttctcagccgggaggataactactccacgcggcgccttgtcgaggtg
ggagaagcccgcggtcacgtggttgaagtcatcgacacaacccgttgttatatggcgatt
aataccatggcgccagaagtgcattatgacgggaaacgcctgccgcgctatgatgcggtc
attccccgcatcggggcttcgatcacgccctatggcaccgcggtgatccgccagttcgaa
gcaattgggacctattgcgtgaacggttccgccgggatcaccgccagccgggacaaactg
cacgcccatcaggtgctggccacaaaacggatcggcatgccatcgacggcctttgccgcc
tcacccaaggacacatcgaacctgatggcattggtcggcaccgcaccgctgattgtcaaa
ttgctcgaaagcacgcaaggcaaaggcgtggttctggccgagacaaaaaaagcagccgag
tccgtcatagatgcattccggggtctcaaggccaattttctggtgcaggatttcgtcaag
gaagcagccggagaggacatccgctgccttgtgatcgccggcaaggtcgttgcggccatg
aagcgcaccggggcggagggggattttcgttccaacctgcatcggggcggatcggcgaaa
gtcgtgcgcatcaccaagcaggagcgcgacaccgccgtgcgcgccgcccgtgcctttgga
ctcggcaaggccggtgtggatttgctgcgcgccaccgcaggccccaaggtgcttgaggtc
aactcctcccccggttttgagggcatcgaaaaagcgactggcaaagatattgtgggcaag
ctctatgatgagatcgaaacccgcgtgcgcccgcagcctgcgcgcaagcggagatcctga
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