Roseobacter denitrificans: RD1_3361
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Entry
RD1_3361 CDS
T00376
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoylalanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00470
D-Amino acid metabolism
rde00550
Peptidoglycan biosynthesis
rde01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RD1_3361 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RD1_3361 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
RD1_3361 (murD)
Enzymes [BR:
rde01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
RD1_3361 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
Precursor biosynthesis
Amino acid ligase
RD1_3361 (murD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
2-Hacid_dh_C
TrkA_N
AlaDh_PNT_C
KARI_N
AdoHcyase_NAD
Motif
Other DBs
NCBI-ProteinID:
ABG32857
RoseoBase:
RD1_3361
UniProt:
Q163I6
LinkDB
All DBs
Position
complement(3225515..3226909)
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AA seq
464 aa
AA seq
DB search
MIPVQGLRGATVAVLGLGRTGMSAARALRAGGALPLCWDDNPDARARAQQEGFTCTQLSR
VADFDDIACLIVSPGIPHLYPAPNPVVRLALQAGVPVDNDIGLFFRSFATNAWANFDTAP
RVVAVTGSNGKSTTSALIHHILEHVGRPATLAGNIGRGVLDIDPPHDGEVVVLELSSYQT
DLARSLTPDVAVFTNLSEDHLDRHGGMGGYFAAKRRLFAEGGPDRAIVGVDEDEGLFLAG
QLAEGRADDRVIRISFAQKLTGPGWQVFARKGFLSEYRKGKQIASVDLRSVPGLPGVHNH
QNACAAYAVCRSLGLAPKVIEAALHSFQGLPHRSQLVGQKDGVRFVNDSKATNADAAAKA
LAAFPSIRWICGGLEKDGGMDALRNASASVVKAYVIGREAAAFAMKLPVEAEICTTMAQA
VEKAAREAEAGDVVLLAPAAASFDQYDNFEQRGDDFMQEVAKYL
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatacccgttcagggattgcgtggcgcaacggtggcggtgctgggtctggggcgcacg
ggtatgagtgccgcgcgcgctttgcgggcagggggggcgctgccgctgtgttgggacgac
aacccggacgcgcgcgcgcgcgcgcagcaagagggatttacctgcacgcaactgtcccgt
gttgcggattttgatgatatcgcctgcctgatagtcagtcccggcatcccgcatctttac
cccgcgccgaacccggttgtgcgccttgcgttacaggccggggtgcccgtggacaatgac
atcggtctgttctttcgctcctttgccaccaatgcttgggcgaattttgacaccgccccg
cgggtcgtggccgtgacggggtccaacgggaaatcgacgacctccgcgctgatccatcat
attctggaacatgtggggcgcccggcgaccttggccggaaacattgggcgtggcgttctg
gacatcgacccgccgcatgatggcgaggtcgtggttctggaactgtccagttatcagacg
gatctcgcacgcagtctgacgcctgatgtggcggtgtttaccaacctctccgaagatcat
ctggaccggcacggggggatgggcgggtattttgccgccaagcgccgcctgtttgccgaa
ggcgggccggaccgtgcgatcgttggggttgacgaggatgaagggctgtttctggcgggg
cagcttgccgagggccgcgcggatgatcgtgttattcgcatttcgtttgcgcaaaagctg
accggacccgggtggcaggtttttgcgcgcaaagggtttttgtctgaataccgcaagggc
aagcagatcgcgtcggttgatctgcggtctgttccgggcttgccgggcgtgcataatcac
cagaatgcctgtgcggcctatgccgtctgccggtccttgggtcttgcgcccaaagtgatc
gaggcggcgctgcattcctttcaaggattgccgcaccgcagccagctggtcgggcaaaag
gacggtgtgcgctttgtgaatgacagcaaggcgacgaatgcggatgccgcggccaaggcg
ctggcggcctttccatccatccgctggatctgcggtgggctggaaaaggatggcgggatg
gacgccttgcgcaacgccagtgcatcggttgtcaaagcctatgtcatcggtcgcgaagcg
gcggcttttgccatgaaactccccgtcgaggccgagatttgcacaaccatggcgcaggcc
gtggaaaaagcggcgcgcgaggccgaggcgggcgatgttgtgctgctggcccctgctgct
gccagctttgatcaatatgacaacttcgaacaacgcggcgatgatttcatgcaagaggtc
gccaagtacctttaa
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