Roseobacter denitrificans: RD1_3374
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Entry
RD1_3374 CDS
T00376
Name
(GenBank) DNA helicase II, putative
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rde
Roseobacter denitrificans
Pathway
rde03420
Nucleotide excision repair
rde03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RD1_3374
03430 Mismatch repair
RD1_3374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rde03400
]
RD1_3374
Enzymes [BR:
rde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RD1_3374
DNA repair and recombination proteins [BR:
rde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RD1_3374
MMR (mismatch excision repair)
Other MMR factors
RD1_3374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
PcrA_UvrD_tudor
UvrD_C_2
AAA_11
DapB_N
DEAD
Motif
Other DBs
NCBI-ProteinID:
ABG32868
RoseoBase:
RD1_3374
UniProt:
Q163H5
LinkDB
All DBs
Position
complement(3237906..3240338)
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AA seq
810 aa
AA seq
DB search
MSSFDDMDAFEGASLSARAMAARPQPYLDGLNPAQREAVEQLDGPVLMLAGAGTGKTRAL
TARIVHLLNTGRARPNEVLAVTFTNKAAREMKNRVGEMLGQPIEGMPWLGTFHAICVKLL
RRHAELVGLKSNFTILDTDDQLRLLKQLVSAEGIDDKRWPARQLASIIDGWKNSAFTPEK
VPTSEAGAYNHKGVKLYAQYQRRLIELNAVDFGDLLLHMVTIFQTHEDVLKQYQRWFAYI
LVDEYQDTNVAQYLWLRLLAAGHKNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGAHVV
RLEQNYRSTPHILAAASGVIAGNEGRLGKTLFTDVTEGEKVRLIGHWDGEEEARWIGDEI
EAAQRGTRGLEKFSLDDMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERMEIRDAM
AYFRVVVSPDNDLAFERIVNTPKRGLGDKAQQTIQTTARANGVSLFEGARLAVAQGLIKG
KGGAELRKLVEGIDRWITMLHQRKQVDGDAVIDDGGGGALAFSHIELAEVILDESGYTTH
WQNEKTPEAPGRLENLKELVSQLQNFENLQGFLEHVSLIMDNERDAGEEKVTLMTLHAAK
GTEFPLIFLPGWEDGLLPSQRSMDEGGTEVRNGKRIAKGLEEERRLAYVGITRAKKLCTI
SFVANRLIFSKGMKGWQSMMPSRFIDELPPEHVEVLTPPGLYGGGYGAAAPRSTLHDQAA
EANVYNSPGWRRLQARSQDRPVSQPRESRNTVIDASALSSFVIGERVFHQKFGYGAVIAI
EGDKLEIAFEKAGTKKVIAKFITAADDIPF
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttttgatgacatggacgcttttgagggcgcatcgctctccgcgcgcgcgatg
gcggcgcgcccgcaaccctatcttgacgggctgaaccccgcgcaacgagaagcagtggag
caattggacggaccggtcctgatgcttgcgggggccgggacgggcaagacgcgggcgctg
acggcgcggatagtgcacctgctcaacacagggcgcgcgcgcccgaacgaagtgctggcg
gtgactttcaccaacaaggccgcgcgcgaaatgaaaaaccgcgtcggcgaaatgttgggc
cagccgattgaagggatgccatggcttggcacctttcatgcgatttgtgtcaaactgctg
cgccgccatgcggaactggtggggttgaagtcgaattttaccattctggacacggacgat
cagttgcgcctgctcaagcaattggtgtctgccgaaggcattgacgacaaacgctggcct
gcccggcagttggccagcatcatagatggctggaaaaacagcgcattcacgcccgaaaag
gtgccgacgagcgaggcgggggcgtataaccacaagggcgtcaagctttacgcccagtat
cagcgccgcctgatcgagttgaacgcggtcgatttcggcgatctgttgttgcatatggtg
acgatctttcagacgcatgaggacgtgctgaaacagtatcagcgctggttcgcctatatc
ctcgtggatgagtatcaggatacgaacgtcgcgcagtatctgtggctgcggcttttggcg
gcgggtcacaagaacatctgctgtgtgggcgatgacgaccagtcgatctatggctggcgc
ggggcggaggtgggcaacatcctgcgcttcgaaaaagacttccccggcgcacatgtggtc
agactggaacagaattaccgctccaccccgcatattctggccgccgcctcgggcgtgatc
gcgggcaatgagggccgtcttggcaagaccctttttaccgacgtgaccgagggtgaaaaa
gtccgcctgatcgggcattgggatggtgaggaagaggcccgctggatcggggatgaaatc
gaagccgcccaacgcggcacccgcgggcttgagaaattcagccttgatgacatggcgatc
cttgtgcgtgcgagccaccagatgcgcgcgtttgaagaccgattcctgaccatcggtctg
ccctaccgcgtcatcggcggcccgcgcttttacgagcggatggagatccgcgatgccatg
gcctatttccgcgtcgttgtcagcccggacaatgatctggcgtttgagcggatcgtgaac
acgcccaaacgcggccttggcgacaaggcgcagcagaccattcagacgacagcgcgcgca
aatggcgtctccctctttgaaggcgcgcgcttggccgttgcccaagggttgatcaaaggc
aagggtggcgcggaattgcgcaaactggttgaggggatcgaccggtggatcaccatgctg
catcagcgcaaacaggtggatggggatgcggtcattgacgacgggggcgggggcgcgctt
gcgttttctcacatcgaacttgccgaggtcatcctcgacgaaagcgggtatacgacccat
tggcaaaacgaaaagacacccgaggcgccggggcgtctggaaaacctcaaggaactggta
agccagcttcagaactttgagaacctacagggctttctggagcatgtcagcctgatcatg
gacaatgaaagagatgcgggcgaagagaaagttaccctcatgaccttgcatgccgccaag
ggaaccgaatttccgttaattttcttaccaggctgggaggacggtctgttgccttcgcaa
cgttcaatggatgaaggtggcaccgaagttagaaatggaaaacgaattgccaaaggttta
gaggaagaacgtagattagcttacgtgggtattacccgtgcaaaaaagctatgtacaata
tcgtttgtagccaatcgtcttatcttttcgaaaggtatgaagggctggcagtctatgatg
ccgtcccggtttatcgacgaattgccgccagagcatgtggaagttctgaccccgccgggg
ctttatgggggcggatacggggccgcagctccccgcagtaccctgcatgatcaggcagcc
gaagcgaatgtgtataattcccccggctggcggcggcttcaggcgcgcagtcaggaccgg
cccgtttctcaaccccgcgagtcgcgcaatacggtgattgacgcctctgccttgtccagt
ttcgtgatcggtgaacgggttttccatcagaaattcggctatggtgccgtgatcgcaatc
gaaggcgacaagctggagatcgcgtttgaaaaggctggcaccaagaaggtgatagccaaa
ttcatcacggcagcggacgatattccgttctga
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