Roseobacter denitrificans: RD1_3465
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Entry
RD1_3465 CDS
T00376
Symbol
dacC
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00550
Peptidoglycan biosynthesis
rde01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
RD1_3465 (dacC)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rde01002
]
RD1_3465 (dacC)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
RD1_3465 (dacC)
Enzymes [BR:
rde01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
RD1_3465 (dacC)
Peptidases and inhibitors [BR:
rde01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
RD1_3465 (dacC)
Peptidoglycan biosynthesis and degradation proteins [BR:
rde01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
RD1_3465 (dacC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Peptidase_S13
Motif
Other DBs
NCBI-ProteinID:
ABG32950
RoseoBase:
RD1_3465
UniProt:
Q162Z3
LinkDB
All DBs
Position
3335314..3336483
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AA seq
389 aa
AA seq
DB search
MFRILLAAFVLVASTLTAAAFETRASAAFVMDQTTGTVLLNKNADAPLPPASMSKLMTLY
MAFEAVRRGKADGGLDLNERLPVSEHAQSYGGSSMFLRSGETVSVEDLLRGIIVVSGNDA
CVVIAEALSPDGTEYGFARMMTQRAQQLGMNNSVFINASGWPQTGHVMSMRDLAILADRL
ITDFPEFYPMFAETEFPFDNRVPSNSRNRNPVLTMGIGADGLKTGHTQEAGYGLVGSAKQ
GDRRIIFVITGLETTAARAQESQAIVNWAFRQFAMRDIGKAGQEFAKADVWMGSSPQVGL
VAAEDMSVLMPALAEREIEAEVVFTGPIEAPIAKGDPLGELVFTPEGLPEMRLPLVADQD
VPSGGFVTRMMTAAMVLVTTLIQGPEEQS
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgtatccttcttgccgcttttgttctggttgcatcgacactgaccgcagcggcc
tttgaaaccagagccagtgctgcttttgtaatggatcagaccaccggcaccgtgctgctc
aataaaaacgccgacgcgcccttgccgccggcctccatgtccaaactgatgacgctttac
atggcattcgaagccgtgcggcgcggcaaggccgacggcgggctggacctaaatgaacgc
ttgcccgtgtccgaacatgcgcagtcctacggcggctccagcatgttcttgcgctccggc
gagacggtcagtgtcgaggatttgctgcgcggcatcatcgtcgtgtcaggcaacgatgcc
tgtgtggtcatcgccgaagcgctttcgcctgatggaacggaatacggctttgcgcgcatg
atgacacagcgcgcgcaacagcttggtatgaacaactccgttttcatcaacgccagcgga
tggccgcaaaccgggcatgtgatgtcgatgcgcgatcttgccattctggctgaccggctg
atcaccgatttcccagaattctacccgatgtttgcggagaccgaattccccttcgacaac
cgtgtgcccagcaacagccgcaaccgcaacccggtgctgaccatgggtattggcgcggac
gggttgaaaaccggccacacgcaagaggccggatacggtcttgtcggctcggccaagcaa
ggtgatcggcggatcatctttgtcatcaccgggttggagacgacagcggcgcgcgcgcag
gaaagccaggccatcgtgaactgggccttcagacaattcgccatgcgcgacattggcaag
gcaggtcaggaatttgccaaggcggacgtctggatgggcagcagcccgcaggtcgggctg
gtcgcagccgaggacatgagcgtgttgatgcccgcccttgcggagcgtgaaatcgaggcc
gaggtggtgtttaccggcccgatcgaggcaccaatcgccaaaggggacccgctgggagag
ctcgtgttcactcctgagggtctgccggaaatgcgcctgccgctggtggcggatcaagac
gtgccgagtggcggttttgtcacccgcatgatgacggcagccatggttctggtcacgacg
ctgatacaggggccagaggaacagtcgtga
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