Roseobacter denitrificans: RD1_3490
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Entry
RD1_3490 CDS
T00376
Symbol
carB
Name
(GenBank) carbamoyl-phosphate synthase, large subunit
KO
K01955
carbamoyl-phosphate synthase large subunit [EC:
6.3.5.5
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00220
Arginine biosynthesis
rde00240
Pyrimidine metabolism
rde00250
Alanine, aspartate and glutamate metabolism
rde01100
Metabolic pathways
rde01110
Biosynthesis of secondary metabolites
rde01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09104 Nucleotide metabolism
00240 Pyrimidine metabolism
RD1_3490 (carB)
09105 Amino acid metabolism
00250 Alanine, aspartate and glutamate metabolism
RD1_3490 (carB)
00220 Arginine biosynthesis
RD1_3490 (carB)
Enzymes [BR:
rde01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.5 carbamoyl-phosphate synthase (glutamine-hydrolysing)
RD1_3490 (carB)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSase_L_D2
CPSase_L_D3
MGS
ATP-grasp
ATP-grasp_3
Dala_Dala_lig_C
ATPgrasp_Ter
CoA_binding_2
RimK
ATP-grasp_5
Motif
Other DBs
NCBI-ProteinID:
ABG32974
RoseoBase:
RD1_3490
UniProt:
Q162W9
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All DBs
Position
3356857..3360216
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AA seq
1119 aa
AA seq
DB search
MPKRTDINSIMIIGAGPIVIGQACEFDYSGAQACKALKEEGYRVILVNSNPATIMTDPEL
ADATYIEPITPEMVAKIIEKERPDALLPTMGGQTGLNTSLALEEMGVLDKFNVEMIGAKR
EAIEMAEDRKLFREAMDRLGIENPKAAIVTAPKDANGKKDLAEGVRLALDTLEEVGLPAI
IRPAFTMGGTGGGVAYNRDDYEAICRSGMDASPVGQILVDESLLGWKEFEMEVVRDTADN
AIIVCSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNHSIAVLREIGVETGGSNVQWA
VNPVDGRMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELDNDITKVTPASF
EPSIDYVVTKIPKFAFEKFPGSTPNLTTAMKSVGEAMSIGRTIHESMQKALASMEEGLTG
FNEIDIPGVGVGHWEVEDANRAAIVKAISQQTPQRLRTIAQAMRHGLTDEDIYGVTMFDP
WFLARIREIIDTEKDLRENGLPTGEKALRSLKMLGFSDARLAQLTNHSEADVRKIRLDQG
VAAVFKRIDTCAAEFEAQTPYMYSTYEAPVFGEAECEARPTDRKKVVILGGGPNRIGQGI
EFDYCCCHACYALTEAGYETIMINCNPETVSTDYDTSDRLYFEPLTFEHVMEIMRVEQEN
GTLHGVIVQFGGQTPLKLANALEEAGIPILGTTPDAIDLAEDRERFQQLVQSLGLKQPKN
GIAHSDAEALEIAQDIGFPLVIRPSYVLGGRAMEIVRDQASLERYISQAVVVSGDSPVLL
DSYLTGAVELDVDALSDGTDVHVAGVMQHIEEAGVHSGDSACSLPPYSLKPEIIEEVTEQ
THALAKALNVVGLMNIQFAVKDDEVYLIEVNPRASRTVPFVAKATDSAIASIAARIMAGE
PLRNFPLRPAYDADAAYEDVLPLGDPMTLADPNMPWFSVKEAVLPFARFPGVDTILGPEM
RSTGEVMGWDRDFPRAFLKAQMGAGNPLPTKGCAFISIKDADKTDEMLDAARLLLEQGFT
LVATRGTAKWLNAHDMACGVVNKVYEGRPDITDMMKDEAIHLVMNSTEGAQAVDDSKSIR
SIALYDKIPYFTTAAGSYAAALAIRAQADGDVGVKALQG
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaaagaaccgacatcaactccatcatgataatcggtgccggccccatcgtcatc
ggtcaggcgtgtgaattcgactactcaggcgcacaggcctgcaaggccctcaaggaggaa
ggctaccgcgtcatcctcgtcaattccaaccccgccacgatcatgaccgaccccgaattg
gcggatgcgacctatatcgagccgatcacccccgaaatggtcgcaaagatcatcgaaaaa
gagcgccccgacgcgctgctgcctaccatgggcgggcagacggggttgaacacatcgctg
gcgctcgaagagatgggcgtgctcgacaagttcaacgtcgagatgatcggcgcgaaacgc
gaagccatcgagatggccgaagaccgcaagctcttccgcgaggcgatggaccgtttgggt
atcgaaaaccccaaggcggcgattgtcaccgcccccaaggatgccaacggcaagaaggac
ctggccgaaggggtgcgtctggcgctcgacacgttggaagaggtgggcttgcccgcgatc
atccgcccggcatttacaatgggcggcaccggtggcggcgtggcctataatcgcgacgat
tacgaagcgatctgccggtccggcatggatgcctcccccgtcggacagatcctggtggat
gaatccctgctgggctggaaagagttcgagatggaggtggtgcgcgacaccgccgacaat
gcgatcatcgtctgctccatcgaaaatgtggacccaatgggcgtgcacaccggcgacagc
atcaccgtggcccctgccctgacgctcaccgacaaggaataccagatcatgcgcaatcac
tcgattgccgtgctgcgcgagatcggcgtcgaaacgggcggatcgaacgtgcaatgggcg
gtcaacccggtcgatggccgtatggtggtgatcgagatgaacccgcgcgtgtcgcgctcc
tccgcgctggcgtccaaggcgacgggtttcccgattgccaagatcgcggccaagctggcc
gtcggctacacgctggatgaactggacaacgacatcaccaaggtcacgcctgcgagcttt
gaaccttcgattgactatgtggtcaccaagattccgaaattcgcctttgagaaattcccc
ggcagcacgcccaatctgaccaccgcaatgaaaagcgtgggggaggcgatgtccatcggg
cgcaccatccacgaaagcatgcaaaaggcgctggcgtccatggaggaagggctcacaggg
ttcaacgagatcgacattccaggtgtcggggtcgggcattgggaggtggaagacgcaaac
agggccgccatcgtcaaggcgatcagccagcagacgccgcagcgcctgcgcaccatcgca
caggccatgcgccacgggctgacggatgaggacatatatggcgtcaccatgtttgatccg
tggttcctcgcgcgtattcgcgaaatcatcgatacggaaaaagacctgcgcgaaaacggc
ctgcccacgggtgaaaaggcactgcgcagcctcaagatgcttggctttagcgacgcacgt
cttgcacaactgaccaatcatagcgaggcagacgtcagaaagatccgcttggatcagggc
gttgccgcggtcttcaagcggattgacacctgtgcggcggaattcgaggcgcaaacaccc
tatatgtattcgacctatgaggcgcccgtctttggcgaggccgaatgcgaagcccgcccg
acggaccgcaagaaggtcgtgatcctcggcggtggtccgaaccgcatcggacaagggatc
gagtttgattattgctgttgtcacgcctgctacgccctgacggaagcggggtatgagacg
atcatgatcaactgcaaccccgaaacggtctcgacggattatgacacctcggaccggctg
tatttcgaaccgctgactttcgagcatgtaatggaaatcatgcgggttgagcaggaaaac
ggcacgctgcacggtgtgatcgtgcagtttggcggtcaaactccgctcaagcttgccaat
gcgctggaagaggcgggcattccgatcctcggcacgaccccggacgccattgatctggcc
gaagatcgtgaacggttccagcagcttgtgcagagccttggtctcaaacagccgaaaaac
ggcattgcccattctgatgccgaagccctcgaaatcgcgcaggacatcggctttccactg
gtgatccgcccgtcctatgttctgggcggtcgcgcgatggagatcgtgcgcgatcaggca
agccttgagcgctatatctcgcaggcggtcgttgtgtccggtgacagccccgtgctgcta
gacagctacctgaccggcgcggtcgagcttgacgtggatgcgctgagtgacgggacggat
gtgcacgtagcaggggtgatgcagcacatcgaagaggcgggcgtgcattcgggcgacagt
gcctgctcgctgcccccctattcgctgaaacctgaaatcatcgaggaagtcaccgaacag
acacatgctctggccaaggcgctcaacgtggttggtctgatgaacatccaattcgcagtc
aaggatgacgaagtctacctgatcgaggtcaatccgcgcgcctcgcgcacagtgcccttt
gtcgccaaggccacggattcggccatcgcctcgatcgctgcgcgcatcatggccggcgag
ccgctgcgcaacttcccactgcgccctgcctatgatgcagatgccgcctacgaggacgtc
ttgcccttgggggacccgatgacgctggccgatccgaacatgccctggttctccgtcaag
gaggcggtcttgccctttgcgcgcttccccggtgtggataccattctgggcccggaaatg
cgctccaccggtgaggtgatgggctgggaccgtgatttcccgcgcgctttcctcaaggcg
cagatgggcgctggcaacccgctgcccacaaagggatgtgccttcatttcgatcaaggat
gcggacaagaccgacgagatgctggatgccgcgcgtcttttgctggaacaaggtttcaca
ctggtcgccacccgcgggaccgcgaaatggctaaatgcgcatgacatggcctgcggcgtc
gtcaacaaggtctacgaaggccgccccgacatcaccgatatgatgaaggatgaggcgatc
catctggtcatgaactccaccgaaggggcgcaggccgtggacgatagcaaatcgatccgt
tccatcgcgctttatgacaagatcccgtatttcacgaccgcggcaggcagctatgcagca
gcgctcgccatccgtgcacaagctgatggcgatgtgggggtcaaagcactgcaaggctga
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