Roseobacter denitrificans: RD1_3670
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Entry
RD1_3670 CDS
T00376
Name
(GenBank) pyridine nucleotide-disulfide oxidoreductase, putative
KO
K00382
dihydrolipoyl dehydrogenase [EC:
1.8.1.4
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00010
Glycolysis / Gluconeogenesis
rde00020
Citrate cycle (TCA cycle)
rde00260
Glycine, serine and threonine metabolism
rde00280
Valine, leucine and isoleucine degradation
rde00310
Lysine degradation
rde00380
Tryptophan metabolism
rde00620
Pyruvate metabolism
rde00630
Glyoxylate and dicarboxylate metabolism
rde00640
Propanoate metabolism
rde00670
One carbon pool by folate
rde00785
Lipoic acid metabolism
rde01100
Metabolic pathways
rde01110
Biosynthesis of secondary metabolites
rde01120
Microbial metabolism in diverse environments
rde01200
Carbon metabolism
rde01210
2-Oxocarboxylic acid metabolism
rde01240
Biosynthesis of cofactors
Module
rde_M00009
Citrate cycle (TCA cycle, Krebs cycle)
rde_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
rde_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
rde_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
RD1_3670
00020 Citrate cycle (TCA cycle)
RD1_3670
00620 Pyruvate metabolism
RD1_3670
00630 Glyoxylate and dicarboxylate metabolism
RD1_3670
00640 Propanoate metabolism
RD1_3670
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
RD1_3670
00280 Valine, leucine and isoleucine degradation
RD1_3670
00310 Lysine degradation
RD1_3670
00380 Tryptophan metabolism
RD1_3670
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
RD1_3670
00670 One carbon pool by folate
RD1_3670
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rde04147
]
RD1_3670
Enzymes [BR:
rde01000
]
1. Oxidoreductases
1.8 Acting on a sulfur group of donors
1.8.1 With NAD+ or NADP+ as acceptor
1.8.1.4 dihydrolipoyl dehydrogenase
RD1_3670
Exosome [BR:
rde04147
]
Exosomal proteins
Exosomal proteins of breast cancer cells
RD1_3670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox_dim
GIDA
Pyr_redox
Pyr_redox_3
NAD_binding_8
Lys_Orn_oxgnase
HI0933_like
DAO
Thi4
FAD_binding_3
3HCDH_N
Motif
Other DBs
NCBI-ProteinID:
ABG33143
RoseoBase:
RD1_3670
UniProt:
Q162F0
LinkDB
All DBs
Position
complement(3534539..3535996)
Genome browser
AA seq
485 aa
AA seq
DB search
MSEYDVDVAILGAGTAGMAAYREAARQTDRIALIDGGPLGTTCARVGCMPSKLLIAAADA
AHEARHTAKFGVHAGDVTVDGVAVMHRLRTERDRFVGFVKEAVDEFKDDHLIRQNARFVD
DHTLELADGTRLSARTVIIATGSRPAVPAPFEVAVDRLIINDDVFDWQDLPRSVAVFGAG
VIGLELGQALSRLGVRVHLFGMGNAVGPLSDPDLVAYARDTFGAEFAAHFDAETKITRDG
DAVVVQWRNRKDASDTGEERFDFLLAATGRRPNLDRIGLENTSLVLDARGTPDIDPQSMQ
ARTKSDTGAPIFVTGDAAVDLPLLHEAADEGRIAGENAARYPEVYRRVRRTGLGVVFSDP
QIAIAGRGHKALTEAGVDFAYGEVSFEDQGRARVIGKDKGLLRVYGDRETGLLLGAEIIG
PAAEHLAHLLAWTIESKLTVTEVLQRPFYHPVIEEGLRTALRNLAATLDFGPNPPLRCID
CGPGG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaatatgacgtagacgttgcaatcctcggcgctggcacggccggaatggctgct
taccgcgaggccgcaaggcaaaccgacaggatcgccctgattgacggaggtcctttggga
acgacctgcgcaagggtcgggtgcatgccctccaaactgttgatcgcggcggcagatgcc
gcgcatgaagcgcgccacaccgcgaaattcggcgttcatgcaggcgatgtaacagtcgat
ggcgttgccgtgatgcaccggctgcgcacagaacgcgaccgtttcgtgggcttcgtcaag
gaggccgtggatgaattcaaggacgatcacctgatccgccagaatgcgcggtttgttgat
gatcacaccttggaactggccgatggcacccggctgagcgcccgcacggtgatcattgcg
acaggctctcgccccgcagtgccggcccccttcgaggtcgcagtggatcggttgatcatc
aacgatgatgtgtttgactggcaggatttgccccgctcggttgccgtctttggcgcaggt
gtgatcgggctggaactgggtcaggcgctgtcgcgtctgggcgtgcgggtgcatctcttc
gggatgggcaatgccgtcggcccgctgagcgatccggatctggtggcctatgcccgtgac
acattcggggccgagttcgccgcgcattttgatgctgagacgaagatcacgcgcgacggt
gacgcggtcgtggtgcagtggcgcaaccgcaaggatgccagcgacacaggcgaagagcgg
ttcgatttcctgctggccgcaacggggcgtcggcccaaccttgaccggatcgggttggaa
aacacctcgctggtgctggatgcgcgcggcacgccagatattgacccgcagtccatgcag
gcacgaaccaagagcgacacgggtgcaccgatctttgtgaccggcgatgccgctgttgat
ctgcccctgttgcacgaagctgcggatgaaggccggatcgcaggcgagaatgccgcccgg
tatcccgaagtttaccgccgcgtgcgccgcacgggcctcggcgtggtgttttctgacccg
cagatcgcgattgccggtcgtggccacaaggcattgacagaggcgggtgtcgatttcgcc
tatggcgaggtttcctttgaggatcagggccgcgcgcgtgtcatcggcaaggacaagggt
ttgctgcgtgtctacggggatcgcgaaaccgggctgttgctcggggccgagatcataggc
ccggcggcggagcatctggctcacctgctggcctggaccatcgagagcaaactgaccgtt
accgaagtgttgcagcgcccgttctatcatcctgtgatcgaagagggcctgcgcaccgcg
ctgcgcaaccttgcagccacattggattttggccccaatccgccgctgcgctgcatcgac
tgcgggccgggcggctga
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