Roseobacter denitrificans: RD1_3736
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Entry
RD1_3736 CDS
T00376
Name
(GenBank) hypothetical protein
KO
K20276
large repetitive protein
Organism
rde
Roseobacter denitrificans
Pathway
rde02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RD1_3736
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF6603
OmpA
CBM13-like
Motif
Other DBs
NCBI-ProteinID:
ABG33206
RoseoBase:
RD1_3736
UniProt:
Q161Y7
LinkDB
All DBs
Position
complement(3615005..3622378)
Genome browser
AA seq
2457 aa
AA seq
DB search
MPFDLSLVDLFRPYILRGEATPWHAVLSVIYVESYETATGPGGMVIRGIGRFSGDVDLPT
FDPSTGTLSGAAANSEGHPRNQPDRSEPWLDVTDTKVEFSMTVPRVSGAIIADGVAGVAG
GDAAFQAVRDVLDALDAPPIDPPPSDYPNTGFTLDLVLSGIEMRPPFLEPAEMRADGLLV
PHPSRRDVVFHLPKVKLRLTQGTDTNAQVQVCLLSLGASGLDDPGALSAAELVTMEPHHA
FIGSGRVVGFGFRSAYLDLSDGYTPPEVLSQFGFDEAWTGLYLPEIRIFFAPNGAEDFAV
NAGVENLLIGLGGSNGVTGDFDVAVINQGGGDLVIGANFFASDGRGIGITRTSPGNATAA
LPETTRLAVDVRGGRAPYSVTVDQGSGAQAGIVHDVTAPATGTRTITITASDASAQPKQA
TLTVSVGRRAPPAIAPPPGAPLAAILETTSITRGAQSLDAPPLALLSDNRETGGVRVSLA
GFSVPPATEWRIDGGPPTVGVTVDIEVTGGQSRAIEARTPDDAVTSLVGFFRFDTPPKVD
YTDYARVPGHIRDKEALTASKTSDWQPGARAFDVAYADILSRINPKDVTITGTASWDGDD
SKAQYNWKLSQRRAEGMRALIEDRFPPSFTGANAPSGETFTASWRDSVWKTQGPTNRSQY
WKATISGFSVNLPGEVITGTVRRPAAPEPLPPPVVPDTPPNDPATPDWFHSARLKVRIIR
NQFVALELSGKIDFQTGLESTLQNGGATELPDDIRGIGNNPADGITDFLFLYQTDPASQT
DEVKLYIGADPADKDGLLMTGQLPGQTLKPKNFGRDLLGMTTIFTPLLAESTPAQGSDGS
IAPLVASAAAVGVATGLAQAGFFNIERVILFGGEGAFRRQGDRWLMSFLFDVETAVSVNI
AFGDGDPLLEIPRDTPLAVRYKAIGLSFGVPPGGGGQFDLRPVFDSSKGYSIDVSGPGAI
RVADPLGQILQVLGARIARTNPLNFEIDLGFAIDLGVVSVDRARVRMPIDPLGPPELTAF
GAGLKVPGVLEGSGYLEFNNGDAGTEIKGGIDVRLIPVKMRIAAQIAIAQIPESAGGPAT
GVAIALEVELPVAIPLAQSGFGIYGFVGLFAMHYARDEDGITSLTPALEWLKNRANGDPT
NLRAWKTNLDSWAFGVGITLGTMGSPIIFNVKGMFLLELPGPRVLLVVKANLLAVLPALK
DKTAEGTFLCVIDLDFGRGTLTIGISIDFTIDPLVEIKIPIEAFFNLRDGKFWHVYLGSF
AGKDLQDNPLPGPIRASILGAFDGSGYVMFSGHGIPSYQPPGNNLPALSQVNGFGIAAGL
EVSIIWGNTSINLYLKVTAGFNAIIGFQPFYVGGLLYIRGELKLFIISLSASAALSAQVG
ERADGTQVSRIDGEVCGELDLFFFSIKGCVDFHIGEDSKILPPPPDLYAGAVLVSRTPAL
AEGTGVDRGIDSKIGDMPRGTSAPADADIPVVPIDAIPVISLAMPALDGGITPLGETPGG
NTGAPAGGFIARGDFAYRFTMTEVTLERVGETDAVMAGNTPSTWWTLEPPDGENLTTHLS
LLNWVPNPAPKALERTEILEETIRERWGKVCEPAAPAAPVLWTFSDERLGPSATGWDLKG
TAWPDPVDAKRSRDPDVELHVHETWRSGDFALDQMRGIVPAVVEGGLVDCAPEDRDGNLN
RGGFETGRLTTGIRGGDLTGAIVTSGRDLTGTLNKIDETGISALKMRTLTRNMSLGAGTL
NKSLGDKMTAKATLNTKLKRTAEREKVNRAIAGSFGTISPVDELSAEHLELGEAIRRVTR
GVEIQRSALLGVLAGASAAGPHGTTVPGGGQVDEPKCPGRVLASPLWDTGAPVVFGDRSR
SDEIADQLAALGLKHGPLSDVIEVDSGAILSGHVLMWVNRGLLNDDQQGTGRGLMIHFLD
ADGDILGMRPVRVSDLLTVTSLPANWMDMNGPWFEDLYHTVLYGQMRLSPRQPVCVELSP
PEGTERFRIGVLYLDEKQAQRFEQEGRPYYVGAIELTRLSEARREAYDNTEIEKDRQVIE
DLVSGASADVALLFPDALYRVTCRADVRILDEEGDESDGADQEATFWFKTDRAAPKRLDP
WILCTLPTEGEAHVFGLDAPRFVFATNSVDQLFAAYGKELRVRLKAASFRQVDEPGAPHP
VPIDAGTLEYVKAHVLSPFEAVVEDVLGESGPCVPIDENRVRHSMLTLPIPLDPYTDYVI
DIEAVDIGADAETVGDRVYRLNFSTGQFGQMEDFASDFQATLYEHRFVQSGALQAIGNDP
RFAGRRLDSILAGQELLSTMGPELDEELIGAGLEPMDVPGAARVIVFWEQANPAADPQPA
ALLLDASEPMHRMRPIPQEVTEEDPDGIAATRWRLEPAPWLSIAENAASDDIVDKILFAP
GAQRALVTLKAGSRGKSLRMDMIRKAFDEPYLDEGFSGNVEIEIIATDLARAPWEEE
NT seq
7374 nt
NT seq
+upstream
nt +downstream
nt
atgccttttgatctatccttggttgatctttttcgcccctatattctgcgcggcgaagca
accccttggcacgctgttctctccgtcatttacgttgaaagctacgagaccgcgaccggc
cccggtggcatggtcatccgtggcatcgggcgtttttcgggggatgtggacctgcccact
tttgatcccagcacaggcacgctcagcggggcggcggcaaattcggaaggacatcccaga
aaccagcccgaccgctcagaaccgtggctggacgtaaccgacacaaaggtcgagttcagc
atgaccgtcccgcgtgtgtcgggcgccattatcgccgacggtgttgcgggggttgccggt
ggggatgctgcgtttcaagcggtgcgcgatgtgctggacgcgcttgacgcgcccccgatt
gatccgccgccgtcggattatccaaacaccgggttcacgctggatctggtcctgtcgggc
atagaaatgcgcccgccgttcctggagcctgccgagatgcgcgcggatggcttgctggtg
ccacatccgtcgcgccgcgacgtcgtgtttcatctgcccaaggtcaagctgcggctgacc
caagggaccgatacgaacgcgcaggtgcaggtctgccttttgtcgctgggggcctctggc
cttgatgatccgggcgcgctttcggcagccgagcttgtcaccatggagccgcatcacgcc
tttatcgggtcaggccgcgtggtggggtttggctttcgctctgcctatctggacctgtcg
gatggctacacaccgcccgaagtcctgtcgcaattcggttttgatgaagcctggaccggg
ctttacctcccggaaatacggattttctttgcccctaacggggcggaggatttcgccgtc
aacgcaggtgttgaaaacctgttgatcggattgggtggctccaacggggtcacgggcgat
tttgatgttgctgtcatcaatcagggcggcggcgatctggtgatcggtgcgaatttcttt
gccagtgacgggcgcgggatcggtatcacgcgcaccagcccgggcaatgcaactgcggcc
ctgccggaaaccacgcggctggcggtggatgtgcgcggggggcgcgcgccttacagcgtc
accgtggatcagggcagtggggcgcaggcgggcatcgtgcatgacgtgacagcgcccgca
accggcacccgaacgatcacgattacagcgagtgatgcaagcgcgcagcccaaacaagca
accctgaccgtttcggtgggacggcgcgcgccgcccgcgatcgcgccgccgccgggcgct
ccgctcgccgccattctggaaaccacatccatcacgcgcggcgcgcagtcgctggatgca
ccgccgctggccttgctcagcgacaaccgcgagacgggcggcgtcagggtcagtctggcg
gggttcagcgtgccacccgcaaccgagtggcgcattgacggcggcccgcccacggtcggc
gtgacggtggatatcgaagtgacgggcggtcagtcccgcgcgatcgaggcgcgcacgccg
gacgatgcggtgacatcgctcgtcgggtttttccgttttgatacgccacccaaggtggat
tacaccgattatgcgcgcgtgccggggcatatccgtgacaaggaagcactgaccgcgagc
aaaacatcagattggcaaccgggggcgcgggcctttgatgtcgcctacgcggatattctg
tcgcgcatcaatcccaaggatgtcaccatcaccggcacggccagttgggacggggacgat
tccaaggcgcagtataactggaagctgagccaacggcgtgcagaagggatgcgcgccttg
atcgaggatcgttttccacccagtttcaccggcgccaacgcaccctcgggcgagaccttc
accgccagttggcgcgacagcgtctggaaaacccaaggtccgaccaatagatcgcaatac
tggaaagcgactatcagcggcttttcggtcaacctgccgggtgaggtcatcaccggcacc
gtgcgcaggccggcagcgcccgagccattgccgccccccgtggtgcccgatacaccgccc
aatgatcccgccaccccggattggttccattcggcgcgtctgaaagtgcgcataatccgc
aaccagttcgtcgcacttgagctttcgggcaagattgatttccagaccggtctggaaagc
acgctgcaaaacggcggggcgaccgaactgccggatgatattcgcgggattggaaataat
ccggcggacggtattaccgatttcctgtttctctaccagaccgacccggcaagccagacc
gatgaggtcaagctttatatcggcgcggacccggcggataaagacgggcttttgatgacc
gggcaactgccggggcaaaccctgaagcccaagaacttcgggcgcgatctgctgggcatg
accacgattttcacgcccttgctggcggagagcacgccagcgcagggctcggatggcagc
atcgcacctcttgtggcgtcggctgccgcggtgggtgttgcaacggggctggcacaggcg
gggtttttcaacatcgaacgggtgatcctgttcggcggggaaggcgcgttccggcggcag
ggggatcgctggctgatgagtttcctgttcgatgtggagacggccgtatccgtcaatatc
gcgtttggcgatggcgacccgctgctggaaatcccgcgcgatacaccgctcgccgtgcgc
tacaaagccattgggctgagctttggtgtgccgcccggcgggggcggtcagttcgacctg
agacccgttttcgacagttccaaaggctattccattgatgtgtccggccccggcgccatc
cgcgtggctgaccctctggggcagattttacaggtgctgggcgcgcggattgcacggaca
aacccgctgaattttgaaattgacctcggctttgccattgatctgggcgtggtgtcggtg
gatcgcgcgcgggtgcgcatgccgattgatccgctgggaccgccggaactgaccgccttt
ggcgcggggttgaaagtgccgggtgtgctggagggatcgggctatctggagttcaacaac
ggggatgccggcaccgagatcaagggcggcattgatgtccgcctgatccccgtcaagatg
cggattgcggcgcaaatcgcgattgcgcagatcccggaatctgcgggcggcccggcaaca
ggtgtggccatcgcgcttgaggtcgaactgcctgtcgccatcccgctggcgcaatcgggc
tttggcatttacggttttgtcggtctttttgcgatgcattacgcgcgtgacgaagacggg
atcacctcgctcaccccggcgctggaatggctgaaaaaccgcgccaatggggatcctacg
aatttacgggcctggaaaaccaacctcgacagttgggcctttggggtggggatcacgctg
ggcacgatgggcagtccgatcatctttaacgtcaagggcatgttcctgctggaattgccc
gggccgcgtgtcctgctggtggtcaaggccaatctgctggcggtgctgccagcgctcaag
gacaagaccgccgaaggcacgttcctctgtgtcattgatctggatttcgggcgcgggacg
ctgaccatcggcatttccattgacttcaccatcgacccgctggtggaaatcaaaatcccg
attgaggcgttcttcaacctcagggatggcaaattctggcacgtgtatctcggcagtttt
gcgggcaaggacttgcaggacaacccgttgccgggtccgatccgtgcgtccatcctcggg
gcctttgacggctccggttatgtgatgttctccgggcatggtatccccagctatcagccg
ccgggcaacaatctgcccgcgctcagccaggtcaatggctttgggatcgccgccgggctt
gaggtgtcgatcatctgggggaacacctcgatcaacctctacctcaaggtgacggcgggc
tttaacgcgatcatcgggttccagccattttacgtgggcgggctactctatatccggggc
gagttgaagctgttcatcatcagcctgtcggcctctgcggctctgtctgcgcaggtcggg
gagcgggcggatggcacgcaggtcagccgcattgatggtgaggtttgcggtgagctggac
ctcttcttcttttccatcaagggctgcgtcgatttccacatcggcgaagactccaagata
ctgcccccgccccccgatctttatgcgggggccgtcttggtcagccgcacgcccgcactt
gccgaaggcaccggggtggatcgtggcatcgacagcaaaatcggagacatgccgcgcggc
accagcgcccctgcggatgcggacatccccgtcgtgccgattgatgcgatcccggtgatc
agccttgcgatgcccgcattggacgggggcatcactccgctgggtgaaacgccgggtggc
aacaccggcgcccccgcgggtggttttatcgcgcggggtgatttcgcctaccgctttaca
atgaccgaggtcacgctggaacgggtcggggagaccgatgcggtcatggccggaaatacg
ccgtcaacatggtggacgcttgaaccgcccgatggtgaaaacctgaccacgcatctgtcc
ttgctgaactgggtgccgaacccggcacccaaagcgctggaacgcacggaaattcttgag
gaaacgatccgcgaaagatggggcaaggtatgtgagcccgcagcccctgcggctccggtt
ctgtggaccttttcggacgaacgtctcggcccctcggccacaggttgggatcttaaaggc
accgcatggcccgatcctgttgatgccaagcgctcgcgtgatccggacgttgaactgcat
gtgcatgaaacatggcgttcgggtgatttcgcgctcgatcagatgcgcggcatcgtcccc
gcggtcgtcgaagggggcttggttgattgcgcgcccgaggaccgcgacggaaacctaaat
cgcggcggctttgaaactggccgcctgacgacaggcatcaggggcggtgatctgacgggt
gcgattgtcacctcagggcgcgatctgacgggcacgctcaacaagatagatgaaaccggc
atctccgcgttgaagatgcggacgctgacgcggaacatgtccttgggggcaggtacgttg
aacaagagtcttggtgacaagatgacggccaaggcaacgttgaacaccaagctgaaacgc
acggcggagcgcgaaaaggtcaaccgcgcgatcgccggatcttttggtacgatcagcccg
gtcgatgagctttcggcggagcatctggagcttggcgaagccatccgccgggtcacgcgt
ggcgttgaaatccagcgcagcgccctgctgggcgtgctggctggggcgagtgctgcgggc
ccgcatggcacaacggtgccggggggtggacaggtcgatgaacccaagtgtccgggccgc
gtgctggcctcgccgctttgggacacgggcgcgccggtcgttttcggagatcgcagccgt
tcggacgagatcgcagatcagcttgcggcccttggcctcaaacacggccccctgtccgac
gtgatcgaagtggacagcggcgccatcctgtcgggtcatgtgctgatgtgggtcaatcgt
ggtcttctgaatgatgatcagcaaggcaccgggcggggtctgatgatccacttccttgat
gcggatggggatattctggggatgcgcccggtgcgggtgtcggatttgctgactgtcacc
agcctgcctgcgaactggatggatatgaatggtccgtggtttgaggatctctatcacacg
gtgctttatggacagatgcgcctcagcccgcgccagcccgtttgtgtggagctttcgccg
cccgagggcacggaacgcttcaggatcggtgtgctttatcttgacgaaaaacaggcgcag
cgttttgagcaagagggacggccctattatgtgggcgcgattgaactgacccgcctcagc
gaagcacgacgcgaggcctacgacaacacggagatcgaaaaagaccgtcaggtgatcgaa
gacctggtcagcggcgcgagcgcggatgttgcattgctgttcccggacgcgctttaccgt
gtcacatgtcgcgccgatgtgcgcatccttgatgaagaaggcgatgagagcgacggtgcg
gatcaggaagcaaccttctggttcaaaacagaccgcgcggccccgaagcgccttgatccg
tggatcctgtgcaccttgccaacggagggggaggcacatgtcttcggccttgatgcgccg
cgctttgtctttgcgacgaattcggtcgatcagctctttgcagcctatggcaaggagttg
cgcgtcaggctcaaggccgcgtcgttccggcaggtcgatgaaccgggcgcgccgcatccc
gttcctattgatgcaggcacgctggaatacgtcaaagcccatgtgctttccccgtttgaa
gcggtggtcgaagacgtgcttggcgagagcggtccttgtgtgcccattgacgaaaaccgg
gtgcgtcattcgatgctgaccctgccgatcccgcttgatccctataccgactatgtcatt
gatatcgaggcggtcgacatcggcgcggatgccgaaacggtcggtgatcgggtctaccgg
ttgaacttctccaccggtcagttcggccagatggaagactttgccagtgattttcaggcc
accctttacgagcatcgctttgtgcaaagcggcgcgttgcaggcgatcgggaatgatccg
cgttttgccgggcgcaggctggacagcatcctcgccggtcaggaacttctgagcaccatg
gggccggaactggatgaggaactgatcggtgcgggtctcgaaccgatggacgtgcccggt
gcggcccgtgtcatcgtcttttgggagcaggcgaacccggccgccgatccgcagccagcc
gccttgctgctggatgccagcgagccgatgcaccggatgcgtccgatcccgcaggaagtc
accgaagaggaccccgacggcattgcggccacccgctggcgtcttgaacctgcgccgtgg
ttatccatcgccgaaaatgcggcatcggatgacatcgtggacaagatattgtttgcgccg
ggggcacagcgcgcgcttgtcacgctcaaggccgggtcgcgtggcaagagcctgcgcatg
gatatgatccgcaaggcctttgacgaaccctatcttgatgaagggttttcggggaacgtc
gagatcgagatcattgcaacggacctggcccgcgcgccctgggaagaagagtag
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integrated database retrieval system
