Roseobacter denitrificans: RD1_3818
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Entry
RD1_3818 CDS
T00376
Symbol
cobB
Name
(GenBank) cobyrinic acid a,c-diamide synthase
KO
K02224
cobyrinic acid a,c-diamide synthase [EC:
6.3.5.9
6.3.5.11
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00860
Porphyrin metabolism
rde01100
Metabolic pathways
rde01240
Biosynthesis of cofactors
Module
rde_M00925
Cobalamin biosynthesis, aerobic, uroporphyrinogen III => precorrin 2 => cobyrinate a,c-diamide
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00860 Porphyrin metabolism
RD1_3818 (cobB)
Enzymes [BR:
rde01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.5 Carbon-nitrogen ligases with glutamine as amido-N-donor
6.3.5.9 hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
RD1_3818 (cobB)
6.3.5.11 cobyrinate a,c-diamide synthase
RD1_3818 (cobB)
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Motif
Pfam:
GATase_3
CbiA
AAA_26
MobB
Motif
Other DBs
NCBI-ProteinID:
ABG33282
RoseoBase:
RD1_3818
UniProt:
Q161R1
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Position
complement(3688904..3690220)
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AA seq
438 aa
AA seq
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MTDVPPGLLISAPSSGTGKTTVMLGLLRALRDDGLTVQPYKSGPDYIDPAFHRAASGRPS
FNLDTWAMDPVLLNGIAAEMMDADICVAEGSMGLYDGVATQGQTGFGSSAETAMRMGWPV
ILVVDVGGQAQSAAATALGFKAYAPDLPFAGVILNRVASPRHERLARLGMDKAGIPVLGV
LPRRGDLSLPERHLGLIQAVEHPDLETAIAGYAEFLRAHVDLSAIHAAAAGTVQQSGGGL
PRPPAQRIALAQDAAFSFTYPHLLKGWRAAGAEILPFSPLADEPPDAGADLVWLPGGYPE
LHAGQLAGASRFLAGLRAHAETRPVHGECGGYMALGTALIDKEGNTHAMAGLLGLVTSYE
KRKFHLGYRRAVLGAAMPGFATGQALRGHEFHYSTILEQPDAALADVFDADGNPVPETGS
LRGNVTGTFFHLITPEAA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgtaccccccggcctgctgatttccgcaccctcttcggggacagggaaaaca
accgtgatgctgggcctgttgcgcgccttgcgtgatgacggattgacggtgcagccctat
aaatccgggcctgattacattgatccggcgtttcaccgtgcagccagcgggcggccctcg
ttcaaccttgatacctgggcgatggaccccgtgctgctgaatgggatcgcggctgagatg
atggatgccgacatctgcgtcgcggaagggtccatggggctttatgatggggtggccaca
cagggccagaccggctttggctccagcgcggagacggcgatgcggatgggctggccggtg
atcttggtcgtcgatgtgggcggtcaggcgcaatctgcggcggccacggcactggggttc
aaagcctatgcgccggatttgccctttgcaggcgtgatcctgaaccgcgtggccagcccg
cgtcacgaacggcttgcgcgccttggcatggacaaggccggcatcccggtgttgggcgtt
ttgccccgtcggggggatctgagcctgccggaacgtcaccttggccttattcaggcggtt
gaacatcctgatctggaaaccgcgattgcgggatatgccgaattcctgcgtgcgcatgtc
gatctgtcggcgatccatgcggcggctgcgggtactgtgcagcaatcgggcggcgggctg
ccgcgcccgcccgcacagcgcattgcgcttgcgcaggatgcggccttttcgttcacctac
ccgcatctgctaaagggctggcgcgcggcgggggccgagatcctaccgttttcgccgctg
gccgatgagccacctgatgcgggtgcagatctcgtgtggttgcccggcggatacccggaa
ttgcatgccgggcaattggcgggggcgtcccggttccttgcaggcttgcgcgcccatgca
gagacgcgcccggtacatggggaatgcggtggatacatggcgcttggtaccgcattgatc
gacaaagagggcaacacccatgcgatggccgggttgcttggccttgtgacttcttatgag
aaaaggaaattccaccttggctaccgtcgtgccgttctaggggcggcgatgcccggtttt
gccaccggtcaggcgttgcgcgggcatgagtttcattactcgaccattctggagcaaccg
gatgcggcgctggcggatgtgtttgatgccgatggcaacccggtgcctgaaaccgggtcg
ttgcgcggcaatgtgacgggtacgttcttccatctgatcacgccagaggcagcatga
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