Roseobacter denitrificans: RD1_3858
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Entry
RD1_3858 CDS
T00376
Name
(GenBank) glycine cleavage T-protein (aminomethyl transferase) family protein
KO
K28979
trimethylamine-oxide aldolase [EC:
4.1.2.32
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00260
Glycine, serine and threonine metabolism
rde00630
Glyoxylate and dicarboxylate metabolism
rde00670
One carbon pool by folate
rde00680
Methane metabolism
rde00785
Lipoic acid metabolism
rde01100
Metabolic pathways
rde01120
Microbial metabolism in diverse environments
rde01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
RD1_3858
09102 Energy metabolism
00680 Methane metabolism
RD1_3858
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
RD1_3858
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
RD1_3858
00670 One carbon pool by folate
RD1_3858
Enzymes [BR:
rde01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.2 Aldehyde-lyases
4.1.2.32 trimethylamine-oxide aldolase
RD1_3858
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GCV_T
DUF1989
GCV_T_C
Motif
Other DBs
NCBI-ProteinID:
ABG33320
RoseoBase:
RD1_3858
UniProt:
Q161M3
LinkDB
All DBs
Position
complement(3727592..3729964)
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AA seq
790 aa
AA seq
DB search
MLDEIYSKVRPGPPSPSKIYVPSQFTLPPGTERYVVEGMGAVLIPVFAGDTVSLTNDEGA
QVCEVIAAGKGGKIDPAILNAPANAQAEGLRRLLVSSDQSLRGLRMGLDARGIDLADAPA
LQIFASDTPAGTQESLRVARDGSLIIAAPGEPMDLERQNTSTPITVMVKRAIIKPHTSFE
LPDPLADPVDDIRVHTQTAEAYFVKAGDYIQIIDVDGRQCTDFECFSARKLDKGIEHALD
VTTTRTLMEHAYPMPGLHAKYYDQEMLPLVEVVQDTCGRHDAFALACSAKYYDDIGYPGH
VNCSENFNAALAKFNVTGRPGWMAINFFFNTFLDEHGVMYSDEPWSRPGDYVLLRALTDI
VCVSSACPDDTSAANGWNPTDIHVRTYSGKEKFQRAIAYRPTPEAEPKMTKQTGFHDSFA
KHTRNFIEYNGYWLANCFAEAGPIEEYHACRQKCVIMDLSPLRKFEIMGPDAEALCQYIF
TRNMKTLAVGGVVYTAMCYEHGGMIDDGTVFRLAKDNFRWIGGSDYGGEWIREQAEKLGL
KVLIRSSTDQLHNVAVQGPESRDLLRKLVWTAPHNPEFDQLGWFRFTPARLRDETGTPFV
VSRTGYTGELGYEVMCHPKDCAEIFDAIWEAGQAHGIKPMGLEALDMVRIEAGLIFAGYD
FSDQTDPFEAGIGFTVPLKSKTDDFIGRDALIRRKENPMRKLVGLEIDSNVDVGHGDCLH
VGRAQVGEVTSSMRSPLLGKNIALARVDVAHAVAGTALEVGKLDGHQKRLPAVIAPNVAA
YDPGKERPRS
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgcttgatgagatttattcaaaggtgcgcccggggccaccgtcgcccagcaaaatctat
gtaccgtcgcagtttaccttgccccccgggacggagcgttacgtggtcgagggcatgggc
gcggttttgatacccgtctttgcgggcgatacggtatccctgaccaatgacgaaggtgcg
caggtctgcgaagtcattgcagcgggaaaagggggcaagatcgacccggcgatcctgaat
gcgccagccaatgcacaggccgaagggctgcgccgcttgttggtaagcagtgatcaatcc
ctgcgcgggctgcgcatgggtcttgatgcgcgcggtatcgaccttgcagatgcgccagcc
ttgcagatattcgccagcgacacgcccgccggaacgcaggaaagcctgcgggtggcgcgt
gacggcagcctgatcatcgcagcgccgggcgaaccgatggacctcgagcgtcagaacaca
agcacaccgatcaccgtgatggtcaaacgcgccatcatcaagccgcacaccagctttgaa
ctgccggacccgcttgccgacccggtagatgacattcgcgtccacacccaaaccgcggag
gcctatttcgtcaaggccggggactacattcagatcattgatgtggatggcaggcagtgc
acggatttcgagtgtttctcggcccgcaagctcgacaaggggatcgaacatgccctggac
gtgacgaccacgcgcacgctgatggagcatgcctatccgatgccgggattgcacgcgaaa
tactatgatcaggaaatgctgccgctggttgaggtcgtacaggacacctgcgggcgccat
gatgcctttgcattggcttgctcggcgaaatactatgatgatatcggctatcccggccat
gtgaattgttcggaaaacttcaatgcggcgctggccaagttcaacgtgacgggccgcccg
ggttggatggcgatcaacttcttcttcaacacctttctggatgagcacggggtgatgtat
tcggatgagccgtggtcccgccccggtgattacgtgctgctgcgggcgctgaccgatatc
gtctgcgtctcatctgcctgcccggatgacacgtctgccgcaaacggatggaacccgacc
gatatccatgtccgcacctactctggaaaagagaaatttcaacgcgcgattgcgtatcgt
cccacccctgaagcagagccaaaaatgacaaaacaaaccggatttcacgatagctttgcc
aagcacacacgtaacttcatcgaatacaatggctattggttggccaattgttttgccgag
gccggaccgattgaggaataccacgcctgccgccagaaatgcgtgatcatggacctcagc
cccttgcgcaaattcgagattatgggacccgatgccgaagcgctgtgccagtatatcttt
acccgcaacatgaagaccctggccgtgggcggggttgtctataccgcgatgtgctacgaa
cacggcgggatgattgacgatggcacggtgttccggctggccaaggacaatttccgctgg
attggcggcagcgactatggcggtgaatggatcagggagcaggctgagaaacttggcctc
aaggttctgatacgttcgtccaccgatcagttgcacaacgtggcggttcagggccctgaa
agccgcgatctgctgcgcaagctcgtctggacagcgccccacaatccggagttcgaccag
cttggatggttccgctttacaccggcgcgcctgcgcgatgaaaccggcacgccctttgtt
gtttcacggacggggtataccggtgaattgggttatgaggtgatgtgtcatcccaaggac
tgcgcagagattttcgatgccatctgggaggccgggcaggcgcatgggatcaaacccatg
gggcttgaggcccttgacatggtgcgcatcgaagcgggcctgattttcgcaggctacgac
ttttccgaccagaccgacccctttgaggcgggcatcgggtttactgtgccgttgaagtca
aaaacggatgatttcattggccgcgatgcgctgatccggcgcaaggaaaacccgatgcgc
aagctggtcggccttgagatcgacagcaatgtggatgtgggccacggcgattgcctgcac
gtgggccgcgcgcaggtcggggaagtgacctcgtccatgcgctccccgcttctgggcaag
aacatcgccctggcgcgcgttgacgtggcccatgccgttgcgggcacagcacttgaggtg
ggcaaactggatggccaccagaaacgtctgcctgcggtaattgcgcccaatgttgcggcc
tatgaccccggcaaggaacgcccgcgctcgtga
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