Roseobacter denitrificans: RD1_3864
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Entry
RD1_3864 CDS
T00376
Name
(GenBank) spermidine/putrescine ABC transporter, ATP-binding protein
KO
K02052
putative spermidine/putrescine transport system ATP-binding protein
Organism
rde
Roseobacter denitrificans
Pathway
rde02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RD1_3864
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rde02000
]
RD1_3864
Transporters [BR:
rde02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
RD1_3864
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
TOBE_2
AAA_21
SMC_N
AAA_29
AAA_25
nSTAND_NTPase5
AAA_16
AAA_30
nSTAND3
AAA_5
nSTAND1
NACHT
AAA_22
RsgA_GTPase
Rad17
AAA_15
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ABG33326
RoseoBase:
RD1_3864
UniProt:
Q161L7
LinkDB
All DBs
Position
complement(3734693..3735760)
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AA seq
355 aa
AA seq
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MNNALPITARHVTKTYGSVHALDDVSLDVKSGEFLTLLGPSGSGKTTLLMVLAGFTRPDS
GSLKFGDEEVIRTAPHLRGVGMVFQNYALFPHMTVAGNVGYPLRLRKTPAAEIARRVEEA
LETVQLGGFGARRIDQLSGGQKQRVALARSIVFEPRILLMDEPLSALDKKLRDQMQIELR
SLHEKLGMTTVYVTHDQREALTMSDRIAVVNHGKIMQLATPRQLYDFPANRFVADFIGDS
TFLPVERRGNQITYAGMALKYAGDVPSAGPLLLMIRPERLRLAAASETANVFQASVSNVV
YQGDSYLMYATLADGTDISLRGGVRGDIVAHLPSVGDPVALSLEAADTVLISADD
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaacgcactgcccatcacggcccggcatgtgaccaaaacctacgggtcggtgcat
gcgcttgatgacgtgtcgctggatgtcaaaagcggcgaattcctgaccctgctggggcca
tcgggttccgggaaaaccacgctgttgatggttctggcggggttcacacgtcccgacagc
ggcagtctgaaattcggcgacgaagaggtcatccgcaccgccccccacctgcgcggtgtg
ggcatggtgtttcagaactatgcgctctttccgcatatgaccgtggccgggaatgtgggc
tatccgctcaggctgcgtaaaacacctgcggctgaaatcgcgcggcgggtcgaagaggca
ctggagacggtgcaactgggcggtttcggggcgcggcgcattgatcaactctccggcggg
caaaaacagcgcgtcgcactggcgcgttccatcgtgtttgagccgcgcatcctgttgatg
gacgaacccctgtctgcgctggataaaaaactgcgcgatcagatgcagatcgaattgcgc
agcctgcacgaaaagctgggcatgacgaccgtctatgtgacccatgatcagcgggaagcg
ctgacgatgtcggaccgcattgcggtggtaaaccacggcaagatcatgcaactggccacg
ccacggcagctctatgattttccggccaaccggttcgtggcggatttcattggtgattcc
acctttttgccggtggagcggcggggcaatcagatcacatatgccgggatggcgctgaaa
tacgcgggcgatgtgccatctgcagggccgctgctgttgatgatccgcccggaacggctg
cgccttgctgcggcatctgagactgcgaatgtttttcaggccagcgtgtccaatgtcgtt
tatcagggcgacagctacctgatgtatgcaacgcttgccgatggcaccgacatcagcctg
cggggcggtgtccgtggcgatatcgtcgcgcatttgccaagcgttggtgatccggtcgcc
ctgtcgcttgaagcggccgatactgtgttgatcagcgctgatgactga
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