Roseobacter denitrificans: RD1_3973
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Entry
RD1_3973 CDS
T00376
Symbol
fadJ
Name
(GenBank) fatty acid oxidation complex alpha subunit, putative
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00071
Fatty acid degradation
rde00280
Valine, leucine and isoleucine degradation
rde00310
Lysine degradation
rde00362
Benzoate degradation
rde00380
Tryptophan metabolism
rde00410
beta-Alanine metabolism
rde00640
Propanoate metabolism
rde00650
Butanoate metabolism
rde00907
Pinene, camphor and geraniol degradation
rde00930
Caprolactam degradation
rde01100
Metabolic pathways
rde01110
Biosynthesis of secondary metabolites
rde01120
Microbial metabolism in diverse environments
rde01200
Carbon metabolism
rde01212
Fatty acid metabolism
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
RD1_3973 (fadJ)
00650 Butanoate metabolism
RD1_3973 (fadJ)
09103 Lipid metabolism
00071 Fatty acid degradation
RD1_3973 (fadJ)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
RD1_3973 (fadJ)
00310 Lysine degradation
RD1_3973 (fadJ)
00380 Tryptophan metabolism
RD1_3973 (fadJ)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
RD1_3973 (fadJ)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
RD1_3973 (fadJ)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
RD1_3973 (fadJ)
00930 Caprolactam degradation
RD1_3973 (fadJ)
Enzymes [BR:
rde01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
RD1_3973 (fadJ)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
RD1_3973 (fadJ)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
RD1_3973 (fadJ)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
3HCDH
ECH_1
ECH_2
NAD_binding_2
UDPG_MGDP_dh_N
DAO
Pyr_redox_2
ApbA
2-Hacid_dh_C
F420_oxidored
Asparaginase
FAD_binding_3
Motif
Other DBs
NCBI-ProteinID:
ABG33427
RoseoBase:
RD1_3973
UniProt:
Q161B6
LinkDB
All DBs
Position
3830600..3832798
Genome browser
AA seq
732 aa
AA seq
DB search
MTDFTMDTDGQGIATITWDVKDKSMNVMTLEAWDVLDGLIDAALGDEAVKGVIITSGKDS
FAGGMDLNVIARMKEMAGDDPAKGLFDGIMNAHRIMRKIERAGMDPKTLKGGKPIATVLP
GTALGIGLEIPLCTHRIFAAPNPKAKIGLPEIMVGIFPGAGGTTRLTRKMGAMAASPFLL
EGKLVDPARAKAAGLIDEVADDPMAAARDWVLNAKDADLVKPWDAKGYKMPGGAPYHPAG
FMTFVGASAMVNGKTQGVYPAAKALLSAVYEGALVPFDTALKVEARWFTNVLMNPSSSAM
IRSLFVNKEALEKGAVRPNDVADQRVKKLGVLGAGMMGAGISLVSAQAGIEVVLIDQTQE
AADRGKAYTASFADKGIARKKTTPEKKEQLLNLITATTELEHLKDCDLIIEAVFEDPKVK
AEMTRKVEAVIPQDCVFASNTSTLPITELAKASSRPDQFIGIHFFSPVEKMLLVEIIKGK
GTGDRAVAKALDYVRQIRKTPIVVNDARFFYANRCIIPYINEGIRMVAEGVEPALIENAA
KLVGMPLGPLQLVDETSIDLGAKIARATKAAMGDAYPDAAVDEVIFWMEGENRLGRKTSA
GFYAYDEKGKRQDLWDGLAVQYPVSDTQPDLIDVQHRLLFSQTLEAVRALEEGVLMDIRE
GDVGAILGWGFAPWSGGPLSWLDMLGAAYAAERCDQLTQSFGERFACPDLLREMATKNQN
FYSRFVQKPKAA
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgactgattttacaatggacaccgatggacaaggcatcgcgacgatcacatgggatgtg
aaagacaaatccatgaatgtgatgacccttgaggcatgggatgtactggacgggctgatc
gacgctgcactgggcgatgaggccgtgaaaggcgtgatcatcacctcgggcaaggacagc
tttgcaggtgggatggacctcaacgtgattgcccgcatgaaagagatggcaggcgatgac
ccggcaaaaggtttgtttgacgggatcatgaacgcccatcgcatcatgcgcaaaatcgaa
cgcgcgggcatggaccccaagacgctgaaaggtggcaagcccattgcaactgtactgccc
ggtacggcccttggcatcgggcttgaaattccgctgtgcacgcatcgcatctttgccgca
cccaatcccaaggccaagatcggcctgcccgagatcatggtcggtatctttcccggtgcc
gggggcacgacccgcctgacgcgcaagatgggggcgatggccgcatcgccgttcctgctg
gaaggcaaactggttgaccccgcgcgcgccaaggccgccgggttgatcgacgaagtggcc
gatgatccgatggccgctgcccgcgactgggtgttgaatgcaaaggacgcggacctcgtc
aaaccgtgggatgccaagggttataaaatgcccggcggtgcgccctatcatccggcgggt
ttcatgaccttcgtcggtgcatctgcgatggtgaacggcaagacccaaggggtgtatccg
gcggccaaggcgttgttgtcagctgtctatgagggcgcgcttgtgccttttgacaccgcc
ctcaaggttgaagcgcgctggttcacgaatgtgctcatgaatccgtcatcatccgcgatg
atccgctcgcttttcgtcaacaaggaagcgctggagaaaggcgcggtgcgcccgaatgat
gtcgcagaccaacgcgtcaaaaagctcggcgtgctgggcgcgggcatgatgggggctggt
atctcgctggtctccgcgcaggccgggatcgaggttgtgctgattgaccagacgcaagag
gccgcagatcgtggcaaggcctataccgccagctttgctgacaaaggcattgcgcgcaaa
aagacaacgcctgaaaagaaagaacaactgctcaacctgatcacggcgaccactgagctt
gaacacctcaaagactgtgatctgatcatcgaggcggtgttcgaggacccgaaagtcaag
gccgaaatgacccggaaggtcgaagccgtgatcccgcaggattgtgtcttcgcctccaac
acctctaccctgccaatcaccgaactggccaaagcctcgtcgcgcccggatcagttcatc
ggcatccacttcttctcgcccgtcgagaaaatgctgctggtggagattatcaagggcaag
ggtacgggcgaccgggctgtagccaaggcgctggattacgtgcgccagattcgcaaaacg
cccatcgttgtgaatgacgcgcggttcttttatgccaaccgctgcatcattccctacatc
aacgaaggcatccgcatggttgccgagggtgttgaacccgcgctgatcgaaaacgcggcc
aaactggtcggtatgccacttggcccgctgcaactggtggatgaaacctcgattgatctg
ggcgccaaaatcgcgcgtgccaccaaggccgccatgggcgatgcctatcccgatgcggcg
gtggatgaggtaatcttctggatggaaggtgaaaaccgtctgggccgcaagaccagtgcc
gggttttacgcctatgacgaaaagggcaaacgtcaggatctttgggacggtcttgccgtg
caatatcctgtttcagatacacagcccgatctgattgacgtgcagcaccgcctgttgttt
tcgcaaacgctcgaagcggtgcgcgcgctcgaagaaggcgtgttgatggacatccgcgaa
ggggacgtcggcgcgattttgggctggggctttgcaccatggtccggcggaccgctcagc
tggctcgacatgctgggcgcggcctatgcggctgagcgctgcgatcagctgacgcaaagc
ttcggggagcgtttcgcctgccccgatctgctgcgcgagatggctaccaagaaccagaat
ttttacagccggttcgtccaaaagcccaaagccgcctga
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