Roseobacter denitrificans: RD1_4234
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Entry
RD1_4234 CDS
T00376
Symbol
fdhA
Name
(GenBank) formate dehydrogenase, alpha subunit
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00630
Glyoxylate and dicarboxylate metabolism
rde00680
Methane metabolism
rde01100
Metabolic pathways
rde01120
Microbial metabolism in diverse environments
rde01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
RD1_4234 (fdhA)
09102 Energy metabolism
00680 Methane metabolism
RD1_4234 (fdhA)
Enzymes [BR:
rde01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
RD1_4234 (fdhA)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Molydop_binding
Fer2_4
Molybdop_Fe4S4
Fer4_7
Fer4
Fer4_21
Fer4_9
Fer4_10
Fer4_8
Fer2
Fer4_6
Fer4_16
Fer4_2
Fer4_4
Fer4_17
Fer4_15
Fer4_22
Fer4_18
DUF4350
Spt4
Motif
Other DBs
NCBI-ProteinID:
ABG33670
RoseoBase:
RD1_4234
UniProt:
Q160C3
LinkDB
All DBs
Position
4108848..4111625
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AA seq
925 aa
AA seq
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MSESITFTLNGKTVTAAPGETIWEVANGRGLKIPHLCHKPAPGYRPDGNCRACMVEIEGE
RVLAASCIREPSEGMVVTTDTHRAESARKMVMELLLADQPEREVAHDKSSHLWDMADENG
IDVSRFPKLEEGRIPLLDDSHVAMSVNLDACIQCGLCVRACRDVQVNDVIGMAGRGHDAY
PTFDFADPMGESTCVACGECVQACPTGALMPSTVVDTDQVGDSADFDSETESVCPFCGVG
CKVSLKVKDGKVKYVEGINGPANEGRLCVKGRFGFDYIHHEHRLTKPLIRREDAPPKGLN
VDPGNLLTHFREATWEEAMEAAAGGLAKLRQAHGGQSVAGFGSAKCTNEEAYLFQKLIRQ
GFKHNNVDHCTRLCHASSVAALIENVGSGAVTATFNEIENADVAIVIGANPVENHPVAAT
YFKQFTKRGGKLIVMDPRGQGLKRFASHMLQFRPGADVSMLNAIMNVIVEENLYDQQYIE
AYTENWEAEKEHLKAFTPEAMEPICGIAPEVIRDVARTFAGANAAMIFWGMGVSQHIHGT
DNSRCLISLALMTGQVGRPGSGLHPLRGQNNVQGASDAGLIPMFLPDYRSVTDPEVREDI
FGVWGRDEDWSDQKGLTVTEIVDQVYAGNIKGMYIQGENPAMSDPDVDHAREAFAKLEHL
VVQDIFLTETACFADVILPASALYEKNGTVSNTNRQVQRVRPAVPPPGEAREDWAITVEL
AQRLGLPWEYTDVSQVFDEMKQVMPSLDNITWERLKTETVTYPSLSETDPGQAVVFGDGF
PRPDGRARFTPASVIPPDEAPDTEYPMIMTTGRQLEHWHTGSMTRRASVLDAVEPEANCS
LHPKTLRRLGVEPGDMVRLTTRRGSIDIMARSDRAVSEDMVFVPFAYVEAAANVLTNPAI
DPYGKIPEFKFAAVRVEAITRVAAE
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagagcatcaccttcaccctgaacggtaaaaccgtcactgccgcaccgggcgag
acgatctgggaagtggccaacggccgcggtctgaagatcccgcatctgtgccacaagccc
gcgccgggctatcgtcctgacggcaactgccgtgcctgcatggtcgagatcgagggcgaa
cgcgttctggccgcgtcctgcatccgcgaaccttccgaaggtatggttgtcaccaccgac
acgcaccgcgccgaaagcgcccgcaagatggtgatggagcttttgcttgcggatcagccc
gagcgcgaggtggcgcatgacaagtcttcccacctgtgggacatggccgacgaaaacggt
atcgacgtcagccgcttccccaagctggaagagggccgcatcccgctgctggatgacagc
cacgtggcgatgtcggtgaaccttgatgcctgtattcaatgcgggctttgcgtgcgcgcc
tgccgtgatgtgcaggtcaatgacgtgatcggcatggcggggcgcggccatgacgcctat
cccacctttgatttcgcggatccgatgggcgagagcacctgcgtggcctgtggcgaatgc
gttcaggcctgcccgaccggggcgctgatgccatcgacggtggtggatacggatcaggtt
ggcgacagcgcggactttgacagcgagacggaaagcgtctgcccgttctgcggtgtcggc
tgcaaggtgtcgctgaaggtcaaggacggcaaggtcaaatacgtcgaaggcatcaatggc
cccgccaacgaaggtcgcctttgcgtcaagggacggttcggatttgactatatccaccac
gaacatcgcctgacgaaaccgctgatccgccgcgaagacgcgccacccaaagggctgaac
gtcgatcccggcaatctgctcacgcatttccgcgaagcaacctgggaagaagcgatggag
gccgccgccggtggtctggccaaactgcgacaggcccatggcggtcagtccgtcgcaggc
tttgggtcggccaaatgcacaaacgaagaagcctatctgttccagaagctgatccgtcag
gggttcaagcacaacaacgtcgatcactgcacgcgtctgtgccacgcctcctcggtggcg
gccctgatcgaaaacgtcggatcgggtgcggtgacagcgacgttcaacgagatcgagaac
gccgatgtcgccatcgtcatcggcgcgaacccggtcgaaaaccatcctgtggcggcgacc
tacttcaagcagttcacaaaacgcggcggcaagctgatcgtgatggacccgcgtgggcag
gggctcaagcggtttgcctctcacatgcttcaattccgccccggtgcggatgtgtcgatg
ctgaacgcgatcatgaacgtgatcgtcgaggaaaacctctacgaccagcagtatatcgaa
gcctacaccgaaaactgggaagctgagaaagaacacctcaaagccttcaccccggaggcg
atggagccgatctgcggcatcgcgccggaggtcatccgcgacgtcgcccggaccttcgcc
ggtgccaatgccgccatgattttctggggcatgggcgtttcacaacacatccacgggacg
gataactcgcgctgtctgatctcactggctctgatgacgggtcaggtggggcgtccgggg
tcgggtctgcacccgctgcggggtcagaacaacgtgcaaggtgcgtcggatgcgggactg
atcccgatgttcctgccggattatcgttcggtcacggacccggaagtgcgcgaagatatc
tttggtgtctggggacgcgacgaggattggtctgatcaaaagggcctgaccgtcaccgag
atcgtcgatcaggtttatgcaggcaatatcaagggcatgtatattcagggcgaaaacccg
gccatgtccgatcccgatgtggatcacgcgcgtgaagcctttgccaagcttgagcatctt
gtcgtgcaggatatcttcctgacggaaaccgcgtgtttcgcggatgtgatcctgccggct
tcggcgctttacgaaaagaacgggaccgtcagcaacaccaaccgccaggtgcagcgtgtg
cgtcccgcggtcccaccgcccggcgaggcgcgcgaggattgggcgatcacggtcgaactg
gcgcaacgtctcggtttaccgtgggagtatactgacgtcagtcaggtctttgacgagatg
aagcaggtcatgccgtcgctcgacaatatcacgtgggaacggctcaagaccgagaccgtc
acctatccgtcgctttcggaaaccgaccccggtcaggcggtggtgtttggtgatggcttc
ccacgtcccgatgggcgcgcgcggttcacccccgccagcgtcatcccaccggatgaggca
ccggacacggaatatccgatgatcatgacgaccggacgtcagttggaacactggcacacg
ggatccatgacgcgccgtgccagcgtgcttgatgcggtcgagcccgaggcaaattgttcg
ctgcaccccaagacattgcgccgactgggtgttgagccgggcgacatggtccgactgacc
acgcgccggggcagcatcgacatcatggcccgttcggaccgggctgtgtctgaggacatg
gtgtttgtgccctttgcctatgtcgaagcggcggcgaatgtgctcaccaacccggcgatc
gacccctacggcaagatcccggaattcaaattcgctgcggtgcgggtcgaagcgatcacc
cgcgtcgcggctgaataa
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