KEGG   Roseobacter denitrificans: RD1_A0013
Entry
RD1_A0013         CDS       T00376                                 
Name
(GenBank) RC163, putative
  KO
K03200  type IV secretion system protein VirB5
Organism
rde  Roseobacter denitrificans
Pathway
rde03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:rde00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    RD1_A0013
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:rde02044]
    RD1_A0013
Secretion system [BR:rde02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   RD1_A0013
SSDB
Motif
Pfam: T4SS GCE_fung End_beta_barrel
Other DBs
NCBI-ProteinID: ABI93317
RoseoBase: RD1_A0013
UniProt: Q07GT2
LinkDB
Position
pTB1:complement(13178..13888)
AA seq 236 aa
MKPFRNRMAVTCLIASVSFGGAAQAQGVPVIDTTAIAQFVAQLDQARQAYTVQLQELTNL
ENQLASMIGPRAISAILNDVTEIQKRVSATSLNEIQDAVLSGTALTDLAELNDAISDIRN
RFDLAGLNDIFTSLEPIDAAITEQATAGVAAIATAEDTYVRANDAMDRINTMITGIDGNA
DLKASIDYNTRVMAELAVLLNENLRVQAAATNVAGANALAQARDNAAARQFNLIGD
NT seq 711 nt   +upstreamnt  +downstreamnt
atgaaaccattccgcaacaggatggcagtcacctgtcttatcgcttcggtctcctttgga
ggggcggcgcaggcgcagggcgtccccgtcatagacaccacggcaatcgctcagtttgtc
gcgcaactggatcaggcgcggcaagcctataccgtccagcttcaggagttgaccaacctt
gaaaaccaactggcgtcgatgattggcccgcgtgcaatctcggccattctcaacgatgtg
acagagatccagaaacgggtctcggccacgtcgctgaacgagatacaggacgccgtgctg
tctggtacggcgctcaccgatctggcggaactgaacgatgctatttccgacatccgaaac
cggttcgatctagcggggctcaatgatatttttacctcccttgagccgattgatgccgca
atcaccgaacaggcgacagcgggcgtggcagcaatcgccacggcggaggacacctatgtg
cgggccaatgatgcgatggaccggatcaacacgatgatcaccggcatcgacggtaacgcc
gatctgaaagccagcattgattacaacacgcgcgtcatggccgaactggctgttttgctg
aacgagaacctgcgggtgcaggccgcggcgacaaatgtcgccggtgccaatgcactcgcc
caggcgcgggacaacgccgccgcacgtcaattcaacctgataggagactaa

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