Roseobacter denitrificans: RD1_B0019
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Entry
RD1_B0019 CDS
T00376
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00521
Streptomycin biosynthesis
rde00523
Polyketide sugar unit biosynthesis
rde00525
Acarbose and validamycin biosynthesis
rde00541
Biosynthesis of various nucleotide sugars
rde01100
Metabolic pathways
rde01110
Biosynthesis of secondary metabolites
rde01250
Biosynthesis of nucleotide sugars
Module
rde_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
RD1_B0019 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
RD1_B0019 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
RD1_B0019 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
RD1_B0019 (rfbB)
00525 Acarbose and validamycin biosynthesis
RD1_B0019 (rfbB)
Enzymes [BR:
rde01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
RD1_B0019 (rfbB)
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GFIT
Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
adh_short_C2
NmrA
NAD_binding_10
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
ABI93428
RoseoBase:
RD1_B0019
UniProt:
Q07GH1
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All DBs
Position
pTB2:complement(21286..22362)
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AA seq
358 aa
AA seq
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MKLLVTGGAGFIGSAVVRQAIAQGHHVVNLDALTYAACLENVASVADNPAYVFEHADIRD
RAALDRVFASHKPDAVMHLAAESHVDRSIDGPGDFIETNITGTYHLLEAARSFWTAQGKP
EGFRFHHISTDEVFGSLGATGQFTETTPYDPRSPYSASKAASDHLVRAWAETYGLPIVMT
NCSNNYGPYHFPEKLIPVVILNALAGKDIPVYGVGENVRDWLYVEDHADALLTVLAKGAV
GRSYNIGGENEAKNIDIVRMICAILDTKKPKTTPSGSAAAGHDKPSYADQITFVTDRPGH
DLRYAIDPTRIATELGWRPSVTLEEGLEKTVQWYLDNEDWWRALQTRDGVGERLGARP
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttctggtgaccgggggcgcggggttcatcggctctgcggtggtgcggcaggcg
attgcacaggggcaccatgtggtgaaccttgatgcgctgacctatgcggcatgtcttgag
aatgtggccagtgtcgcggacaaccccgcctatgtttttgagcacgccgatatccgcgac
cgtgcggcgctcgaccgggtctttgccagccataaacctgacgcggtgatgcatctggcg
gcggaaagccatgtggaccgctccatcgacgggccgggcgatttcatcgagaccaacatc
accggcacctaccacctgctggaggccgcgcgcagcttttggacagctcaaggtaagccc
gaaggtttccgctttcatcatatctccaccgatgaggtgtttggctccctgggcgcgacc
ggacaattcaccgaaaccacgccttacgatccgcgctcgccctattcagcgtccaaggcg
gccagcgaccacctggtgcgcgcctgggcggaaacctatgggctgcccatcgtgatgacc
aattgttcgaacaattacggcccctaccatttccccgaaaagctgatccccgtggtgatc
ctgaacgcgctggcgggcaaggatatccccgtctatggcgtgggcgagaacgtgcgcgac
tggctttatgttgaggatcacgcggatgcgttgctcacggtgctggcgaaaggggcggtg
gggcgcagctataacatcggtggtgaaaacgaggcgaaaaacatcgatatcgtgcggatg
atctgcgccatattagacactaaaaaacccaaaaccacgccctcaggcagcgcagcggca
gggcatgacaaaccctcctacgcggatcagatcaccttcgtcaccgaccgccccggccat
gacctgcgctacgccatcgaccccacccggatcgccacagaactgggctggcgcccttcg
gtcacgctggaggagggcctggaaaaaaccgtgcaatggtatctcgacaacgaagactgg
tggcgcgccctgcaaacccgcgatggggtgggcgaacggttgggcgcgcgcccatga
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