Roseobacter denitrificans: RD1_C0002
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Entry
RD1_C0002 CDS
T00376
Symbol
virD
Name
(GenBank) virD4 protein, putative
Organism
rde
Roseobacter denitrificans
Pathway
rde03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
RD1_C0002 (virD)
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Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TraG-D_C
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
ABI93467
RoseoBase:
RD1_C0002
UniProt:
Q07GD2
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Position
pTB3:complement(1189..2598)
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AA seq
469 aa
AA seq
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MASGADAYFGLTGDSHGSARFANRKELKKLQRQDGLLIGRNPHTGRLLHYDGPAHLITLA
PTRAGKGVGTVIPNLLAAERSVLVIDPKGENARIAGEARRRFGTVYVLDPFEVSGHPSAA
YNPLDRLTPDSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRD
RRSLATVREYLTLPPEKLRALLELMQDSDEAGGLIARAANRFLGKADREAASVLSNAQRH
THFLDSPRIARCLARSDFAFSDLRHRITSVFLVLPPNRMDAYSRWLRLLVSQALQDVARD
AERPQGASDGHSQRLKTPALFMLDEFAALGRLEAVERAMGLMAGYGLQLWPILQDMSQLK
DLYGDRANTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGFQTDSFKPGDGPSFSNNLT
GRDLLTPDEIMQLPPDRQLLRVQGQATAVAQKLRYFADPEFAGLFTPEA
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggcctccggggccgatgcctatttcgggctgacgggcgacagccacggttcggcccgg
tttgcgaaccgtaaggagctgaagaagcttcagcggcaagacggtctcctgatcgggcgc
aatcctcacacaggtcggttgcttcactatgacggcccggcgcatctgatcaccctcgcc
ccgacacgggcagggaaaggcgtcggcaccgtgatcccgaacctgctggcggcggaacgc
tccgtcctggtcatcgaccccaagggcgagaatgcccggatcgccggggaagcccggcgg
cgcttcgggacggtttatgtcctcgatccgtttgaggtcagcggccatccctccgccgcc
tacaacccgctcgaccggctgacaccggacagcctcgatctgggtgaggatgccgcctcc
ctgacagaggcgctggtcatggacccgccgggccaggtgactgaagcgcactggaacgag
gaggccaaggccatcctcggcggtctgatcatgttttgcgtctgtcacgaggatcgcgac
cgccggtctctcgccaccgtccgggaatatctcaccctacccccggaaaaacttcgggcg
ttgttggagctgatgcaggacagcgacgaggcaggcgggctgattgcccgcgccgccaac
cgcttcctcggcaaggccgaccgggaagccgcttcggtcctgtcgaacgcgcagcgacac
acccatttcctcgacagcccgcgcatcgctcgatgcctggcgcggtcggactttgccttc
tccgatctgcgccatcggataacgtccgtgtttctggtcctgccacccaaccggatggac
gcctacagccgttggctgcgcctcctggtatctcaggccctccaagacgttgcgcgggac
gctgagcggcctcagggcgcatctgacggccattctcagcgtctcaagaccccagccctc
ttcatgctcgatgaattcgctgctctgggccgtctggaggccgtagagcgcgctatgggg
ctgatggcaggctatgggcttcagctctggccgatcctgcaggacatgagccagctcaaa
gacctctacggcgaccgagcaaacaccttcatcgcaaatgccggggtgcaacaggtcttc
ggtgtgaacgatttcgagacagcgaaatggctgagccagatgatcggccaggaaaccgcc
gggttccagactgacagcttcaagcccggcgatggccccagcttttcgaacaacctcacg
ggccgtgatctactgacccccgatgaaatcatgcagcttcccccggatcgtcagctcctg
cgcgtccagggacaggccactgccgtcgcgcaaaagctgcgttacttcgctgatcctgaa
tttgccgggctgttcacacctgaagcctga
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