Rhizorhabdus dicambivorans: CMV14_02370
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Entry
CMV14_02370 CDS
T05084
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
rdi
Rhizorhabdus dicambivorans
Pathway
rdi02020
Two-component system
rdi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rdi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CMV14_02370 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CMV14_02370 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rdi03021
]
CMV14_02370 (rpoN)
Transcription machinery [BR:
rdi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CMV14_02370 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_3
HTH_IclR
Phage_CII
HTH_31
Motif
Other DBs
NCBI-ProteinID:
ATE63385
UniProt:
A0A2A4G0T6
LinkDB
All DBs
Position
491858..493393
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AA seq
511 aa
AA seq
DB search
MALGPRLDLRQSQSLVMTPQLQQAIKLLALSNLEVEAFIAEEIEKNPLLDGGGEAAEREP
GDTPDEGHDDDGFSADGFGGDDEEWDGPTADRLIEAGDAAADAPLDADYDAETFHHDSAA
DSARGPEGPGLDGVGSGGGSEERPDLDEYATATLSLHDHLTAQAGELLSGHEMAIAARII
DLIDEAGYFEGQTLEIAQLLDVPLFHVERILSVIQTLDPSGVGARTLAECIAIQAREADR
YDPAMAKLIDNLDLLARGAIPQLRRLCGVDEEDMADMIRELRDYDPKPGLRFGGEPAAPV
TPDIFVHRTANGWAVELNNATLPRLIVNRSYYSELSSGPQDKGSKAWLSECLASANWLVK
ALDQRARTIVKVAREIVKQQEAFFLHGVEHLRPLTLKAVADAIGMHESTISRVTSNKYLM
CERGLHELKYFFTSGVAAADGGDAVSAEAVKSQIAKLIAAEGDDILSDDKLVELLKEKGF
DLARRTVAKYREAIGLGSSVQRRRQRAMKAA
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcattaggcccccgcctcgatcttcggcaaagccagtcgctggtgatgacgccgcag
ctccagcaggcgatcaagctgctggcgctctccaatctcgaggtcgaggcgttcatcgcc
gaggagatcgagaagaacccgctgctcgacggcggcggggaagcggccgagcgcgagccc
ggcgacacgcccgacgaaggccatgacgacgatggtttctcggccgatggcttcggcggc
gatgacgaggagtgggacggccccaccgccgaccggctgatcgaggccggcgacgcggcg
gccgatgcgccgctcgacgccgattacgatgccgagaccttccaccatgacagcgcggcc
gacagcgcgcggggcccggaagggcccgggctggacggcgtgggaagtggcggcggatcg
gaggaacggcccgatctggacgaatatgcgaccgccaccctctcgctccacgatcatctc
accgcacaggcgggcgagctgctgtcgggccatgaaatggcgatcgccgcccggatcatc
gacctgatcgacgaggccggctatttcgagggccagaccctggagatcgcccagttactc
gatgtgccgctgttccatgtggaacgcatcctgtcggtcatccagacgctcgatcccagc
ggggtgggcgcccgcaccctcgccgaatgcatcgcgatccaggcgcgggaggcggaccgc
tacgatccggcgatggcgaagctgatcgacaatctcgacctgctcgcgcgcggcgccatc
ccccagctgcgccgcctgtgcggtgtcgacgaggaggacatggcggacatgatccgcgag
ctgcgcgattatgatccgaagcccggcctgcgcttcggcggcgagccggcggcgcccgtc
acccccgacatcttcgtccaccgcaccgccaatggctgggcggtcgagctgaacaacgcc
accctgccgcggctgatcgtcaaccgcagctattatagcgaattgtcgagcgggccgcag
gacaagggcagcaaggcctggctgagcgaatgcctcgcctcggccaactggctggtcaag
gcgctcgaccagcgcgcgcggacgatcgtcaaggtggcgcgcgagatcgtcaagcagcag
gaggccttcttccttcacggggtcgagcatctccgcccgctcaccctgaaagcggtggcc
gatgcgatcggcatgcacgaatcgacgatcagccgggtcacgtcgaacaaatatctgatg
tgcgagcgcggcctgcacgagctcaaatatttcttcaccagcggcgtcgcggcggccgat
ggcggcgacgcggtctcggccgaggcggtcaagagccagatcgccaagctgatcgccgcc
gagggcgacgatatcctctccgacgacaagctggtcgagctgctcaaggagaagggcttc
gatctggcgcggcggacggtcgccaaatatcgcgaggcgatcggcctggggtcctcggtg
cagcgccgccggcagcgcgcgatgaaggcggcttag
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