Rhizorhabdus dicambivorans: CMV14_05420
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Entry
CMV14_05420 CDS
T05084
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rdi
Rhizorhabdus dicambivorans
Pathway
rdi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CMV14_05420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rdi03400
]
CMV14_05420 (mfd)
Enzymes [BR:
rdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CMV14_05420 (mfd)
DNA repair and recombination proteins [BR:
rdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CMV14_05420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
UB2H
MFD_D3
Cas3-like_C_2
SNF2-rel_dom
RecG_dom3_C
AAA_16
PRC2_EED_ins
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ATE63900
UniProt:
A0A2A4FUX8
LinkDB
All DBs
Position
complement(1129566..1133057)
Genome browser
AA seq
1163 aa
AA seq
DB search
MTDLTRILQSSEALTLSRAPAGFQPWLVADLARAAVARGGRLVFVASDDQAMHALAEAAR
YFAPELDVVMFPAWDCLPYDRASPALRATSERLAALHALQSSPKGPTLVATTINAVSQRV
LTPFRIRQLVARLAPGERIDRDRLAALLQANGYVRTDTVTEHGEYAVRGSLVDLFPAGEP
HALRLDFFGDEIESVRQFDATDQRTIGPIDGFTLLPAAEALLDEETIKRFRGRYRERFGA
TATGDPIYQAVSDGRRLAGMDHWLPLFEERLETLFDHLSPDDLILREAGTVKAAEARFEA
IADYHANRVRARTADPGSYRPLEPGELYLSAEQWRDTIADRPIHLVTPFAEPESKRVIDL
GVEGARDFAPERTQGVNIYDAVVEHVEALGKAGKTVVLASYSTGSRERFAGLLAEHGLER
IDLADDWQGAISQPAPGKSLGSGLARVALAVLPLDHGFTSGDIALLTEQDMLGDRLVRRQ
KRKKSADAFLQELATLSPGDLVVHMDHGIGRYEGLTSIPVAKAPHDCVALSYHGGDKLYV
PVENIDVLSRYGAENEGVQLDKLGGVGWQTRKARMKERIREIAGELIKTAAERALRPAEA
VEPESGYNEFVDRFPYQETEDQDRAIADVIEDLAAGKPMDRLVCGDVGFGKTEVALRAAF
VAALGGMQVALICPTTLLARQHYRNFVERFHNMPVNIGHLSRLVTAGEAKKTKDGLADGS
IDIVIGTHALLAKGIEFKRLGLVIVDEEQRFGVTHKERLKALKTDVHMLTLTATPIPRTL
QMAMSGLRELSVIQTPPVDRLAVRTYVAPWDGVVIREALLREHYRGGQSFLVTPRIKDLP
DIEDYLRKEVPEVSYVVAHGQMAPSEVEERMSAFYDKKFDILVSTTIIESGLDIPSANTL
IVNRADRFGLAQLYQLRGRVGRSKTRAYAYLTTGDKGMTETAEKRLHILQNIDTLGAGFQ
IASHDLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEEAILEAKAGGLASELKRENFSPQI
NVDTPILIPEDYVPDLDLRMGLYRRMNEIETRAEIESFAAELIDRFGKLPQATQNLLTVI
EIKLNCRKACVAKIDTGPRGALVSFHNDQFPDLPGLLAYVDRLKDSARLRPDSRLVITRN
WPDPENRLNGALQLSRGLAKIIG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccttacccgcatcctccagtcctccgaagcgttgaccctgtcgcgcgcgccg
gccggcttccagccatggctggtggccgatcttgcgcgggccgccgttgccaggggcggg
cggctcgtcttcgtcgcgtccgacgaccaggcgatgcacgcgctggccgaagccgcccgc
tatttcgcgcccgaactggacgtggtgatgtttcccgcctgggactgcctgccctatgac
cgcgccagcccggcgctgcgcgcgaccagcgagcggctggcggcgctgcatgccttgcag
tccagccccaagggcccgacgctggtcgcgaccaccatcaacgcggtcagccagcgggtg
ctcacccccttccgcatccgccagctggtcgcgcggctggcaccgggcgagcggatcgac
cgggatcggctcgcggccctgctccaggcgaacggctatgtccgcaccgacaccgtcacc
gagcatggcgaatatgcggtgcgcggcagcctcgtcgacctgttcccggcgggcgagccc
catgcgctgcggctcgacttcttcggcgacgagatcgagagcgtccgccagttcgacgcc
accgaccagcggacgatcggcccgattgacggcttcaccctgctgccggcggccgaggcg
ctgctcgatgaggagacgatcaagcgtttccggggccgctatcgcgagcgtttcggcgcg
accgcgaccggagacccgatctaccaggccgtgtccgatgggcgccgcctggccggcatg
gaccattggctgccgctgttcgaggagcggctggagacattgttcgaccatctctcgccc
gacgacctgatcctgcgcgaggcgggcacggtgaaggcggccgaggcgcggttcgaggcg
atcgccgactatcacgccaaccgcgtgcgcgcgcggaccgccgatccgggcagctatcgc
ccgctggaaccgggcgaactctatctgtcggccgagcaatggcgcgatacgatcgccgac
cggccgatccacctcgtcaccccgttcgccgagcccgagagcaagcgggtgatcgacctc
ggcgtcgagggcgcccgcgacttcgcgcccgagcggacccagggcgtcaacatctacgac
gccgtcgtcgagcatgtcgaagcgctgggcaaggcgggcaagacggtggtgctcgccagc
tattcgaccggatcgcgcgagcgcttcgccgggctgctggccgagcatgggctggagcgg
atcgatctggccgacgactggcagggggcgatatcccagcccgcgccgggcaagtcgctg
ggcagcgggctcgcccgggtcgcgctcgcggtcctgccgctcgaccatggcttcaccagc
ggcgatatcgcgctgctcaccgaacaggacatgctcggcgaccggctggtccggcggcag
aagcgcaagaaatcggcagacgccttcctgcaggaactggcgacgctcagccccggcgat
cttgtcgtccatatggatcacggcatcggccgctatgaggggctaacctcgatccccgtc
gccaaagcgccgcacgactgcgtggcgctgagctatcatggcggcgataagctttacgtc
cccgtcgagaatatcgacgtgctgagccgttacggcgcagagaatgagggcgtgcagctc
gacaagctgggcggggtcggctggcagacccgcaaggcgcggatgaaggagcggatccgc
gagatcgcaggcgagttgatcaagaccgccgccgaacgcgcgctgcgccccgccgaagcg
gtggaacccgagagcgggtataacgagttcgtcgaccgcttcccctatcaggagaccgag
gaccaggaccgtgcgatcgccgacgtgatcgaggatctggcggcgggcaaaccgatggac
cggctggtctgcggcgacgtcggcttcggcaagaccgaggtggcgctgcgtgccgccttc
gtcgcggcactgggcggaatgcaggtggcgctgatctgcccgaccaccctgctcgcccgg
cagcattaccgcaatttcgtcgagcgcttccacaacatgccggtgaatatcggccatctc
tcccgcctcgtgacggcgggcgaggcaaagaagaccaaggacgggctcgccgacgggtcc
atcgacatcgtcatcggcacccatgcgctgctggccaaggggatcgagttcaagcggctc
ggcctcgtcatcgtcgacgaggagcagcgcttcggcgtcacccacaaggagcggctgaag
gcgctcaagaccgacgtccatatgctgacgctgaccgcgacgccgatcccgcgcaccttg
cagatggcgatgtcgggcctgcgcgagctgagcgtgatccagaccccgccggtcgaccgc
ctcgcggtgcgcacctatgtcgcgccctgggacggggtggtgatccgcgaggcgctgctg
cgcgaacattatcgcggcggacagagcttcctcgtcacgcccaggatcaaggacctgccc
gacatcgaggactatctgcgcaaggaggtgcccgaggtctcctatgtcgtcgcgcacggc
cagatggcgccgagcgaggtcgaggagcggatgtcggccttctacgacaagaagttcgac
atcctcgtctcgaccacgatcatcgagagcgggctggacatcccgtcggccaacacgctg
atcgtcaaccgcgccgatcgcttcggcctcgcccagctctatcagttgcgcgggcgggtc
ggccggtcgaagacgcgcgcctacgcctatctgacgaccggcgacaaggggatgaccgaa
accgccgagaagcggctccacatcctgcagaacatcgacacgctgggcgcgggattccag
atcgcgagccacgacctcgacatacgcggcgcgggcaatctgctgggcgacgagcaatcg
ggccatatcaaggaggtcggcttcgagctgtaccaatcgatgctggaggaggcgatcctc
gaggccaaggccggcgggttggcgtccgagctgaagcgcgagaatttctcgccgcagatc
aatgtcgacacgccgatcctgatccccgaggactatgtccccgacctcgacctgcgcatg
ggcctctatcgccgcatgaacgagatcgagacccgcgccgagatcgaaagcttcgccgcc
gagctgatcgaccgcttcggcaagctgccgcaggcgacccagaacctgctgaccgtgatc
gagatcaagctcaactgccgcaaggcctgcgtcgccaagatcgacaccggcccgcgcggc
gcgctggtgagcttccacaacgatcagtttcccgacctgccggggctgctcgcctatgtc
gaccggctgaaggacagcgccaggctgcgccccgacagccggctggtgatcacccgcaac
tggcccgacccggagaaccggctgaacggcgcactgcaattgtcgcggggactggcgaag
atcatcgggtga
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integrated database retrieval system
