Rhizorhabdus dicambivorans: CMV14_15605
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Entry
CMV14_15605 CDS
T05084
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rdi
Rhizorhabdus dicambivorans
Pathway
rdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMV14_15605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rdi03019
]
CMV14_15605
Enzymes [BR:
rdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CMV14_15605
Messenger RNA biogenesis [BR:
rdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CMV14_15605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATE67377
UniProt:
A0A2A4FTG7
LinkDB
All DBs
Position
complement(3302682..3304025)
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AA seq
447 aa
AA seq
DB search
MTKFSELGLIEPLQRALAAKGYDIPTPIQQQAIPPLLEGRDLCGIAQTGTGKTAAFALPS
LHYLSENLKHTPPQGCRMLILAPTRELASQIAESFVQYGKFLRLSVATVFGGVPINRQIR
QLQRGVDVLVATPGRLLDLIDQRALSLKFVELFVLDEADQMLDLGFIHALKRIDQLLPKK
RQSLFFSATMPKAIADLGDRFLTNPVKVSVAPQSTTAERVEQFATFCNPQEKQALLIMRI
RSEPIDRALVFTRTKHGADRVVKHLRAAGIAAEAIHGNKSQPQRERALGLFRQGEVKILV
ATDIAARGIDVGGVSHVFNFELPNVAEQYVHRIGRTARAGAAGIAIAFVADDERPYLKAI
EKLTRVKLEVQPLPENFVSEKAKMPKPAAPTAEELRQQRNGQNGRRHDGGGRNARDGAGE
GPPKRRFSRPKGAPGAHKGAVRKFGGR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaaattttccgaactcggcctgatcgagccgctccagcgcgcgctggccgccaag
ggctatgacatccccacgccgatccaacagcaggccatcccgccgctgctcgaaggccga
gacctgtgcggcatcgcccagaccggcaccggcaagaccgcggccttcgcgctgccgtcg
ctccattatctttccgaaaacctcaagcatacgccgccgcagggctgccggatgctgatc
ctggcgccgacccgcgagctggccagccagatcgccgagagcttcgtccaatatggcaag
ttccttcgtctgagcgtcgccaccgtgttcggcggcgtgccgatcaaccggcagatccgc
cagctccagcgcggtgtcgacgtgctcgtcgcgacgcccggccgcctgctcgacctgatc
gaccagcgcgcgctgagcctgaagttcgtcgagctgttcgtcctcgacgaggcggaccag
atgctcgatctcggcttcatccacgcactcaagcggattgaccaactgctgccgaaaaag
cgccagtcgctgttcttctcggccaccatgcccaaggcgatcgccgatctgggcgaccgt
ttcctgaccaacccggtcaaggtgtcggtcgcgccgcagtcgaccaccgccgagcgggtc
gagcagttcgctaccttctgcaacccgcaggagaagcaggcgctgctgatcatgcgcatc
cgctccgagccgatcgaccgtgcgctggtgttcacccgcaccaagcatggcgccgaccgc
gtcgtgaagcatctgcgtgccgccggcatcgcggccgaagcgatccacggcaacaagagc
cagccgcagcgtgagcgcgcgctgggcctgttccgccagggcgaggtgaagatcctcgtc
gccaccgacatcgccgcgcgcggcattgatgtcggcggggtcagccatgttttcaatttc
gagctgcccaatgtcgccgagcaatatgtccaccgcatcggccgcaccgcccgcgcgggt
gccgcgggcatcgccatcgccttcgtggccgatgacgagcggccctatctgaaggcgatc
gagaagctgacccgggtcaagctggaggtccagccgctgccggagaacttcgtcagcgag
aaggcgaagatgccgaagcccgccgcgccgaccgccgaggagctccgccagcagcgcaac
ggccagaacggccgtcgccatgatggtggtggacgcaacgcccgcgacggtgccggcgaa
ggcccgcccaaacgccgcttcagccgccccaagggcgcgcccggcgcgcacaagggggcg
gtgaggaagttcggcggacggtaa
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