Rhizorhabdus dicambivorans: CMV14_22955
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Entry
CMV14_22955 CDS
T05084
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rdi
Rhizorhabdus dicambivorans
Pathway
rdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMV14_22955 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rdi03019
]
CMV14_22955 (pnp)
03016 Transfer RNA biogenesis [BR:
rdi03016
]
CMV14_22955 (pnp)
Enzymes [BR:
rdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CMV14_22955 (pnp)
Messenger RNA biogenesis [BR:
rdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CMV14_22955 (pnp)
Transfer RNA biogenesis [BR:
rdi03016
]
Prokaryotic type
tRNA degradation factors
CMV14_22955 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
aRib
DUF3016
CSD
Motif
Other DBs
NCBI-ProteinID:
ATE66918
UniProt:
A0A2A4FWU0
LinkDB
All DBs
Position
complement(4861310..4863646)
Genome browser
AA seq
778 aa
AA seq
DB search
MFDTKKVEIQWGGQTLTLETGRVARQADGAVLATLGETVVLCAVTAARSVKEGQDFFPLT
VHYQEKYFSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSY
DGENEPDILAMIAASAALTISGVPFMGPIGAARVGYKDGEYQLNPTDGQVAEGDLDLVVA
ATHDAVMMVESEAKELSEDTMLGAVLFAHKAIKDVIKAIIKLAEKAAKDPWEMAPQADLS
AAKTKLKKLIGKDIDAAYKLTDKSARSAALNEARAKAKAAFADAAPQDQMAANKLVKKLE
AEIVRTAILKDGRRIDGRDTKTVRPIVAEAHFLPRAHGSALFTRGETQSISTCTLGTKES
EQMIDGLTGLRYEHFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHAVLPSKEEF
PYTIRLTSDITESNGSSSMATVCGGSLAMMDAGVPIKRPVSGIAMGLILEGKNFAVISDI
LGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITEEIFKTALHQAKEGRAHILGEMAKAL
DSTRTELSAHAPRIETMSVPKDKIRDIIGTGGKIIREIVATTGAKVDIDDDGTVKISSSD
ITQIEAAKNWIIGIVAEPEVGKIYVGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVEK
VADALSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGEELPDTRPPREPREGGDRGPRGDR
GDRGRGPRRDGDRDRGPRRDGGDRGPRGDRGPRRERSEGGDDGPAPDFAPAFLKRDDD
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgttcgataccaagaaagttgaaatccagtggggcggccagaccctcacgctggaaacg
ggccgtgttgcccgtcaggccgatggcgcggtgctcgcgaccctcggcgagaccgtcgtc
ctctgcgccgtcacggcggcgcgcagtgtcaaggaagggcaggacttcttcccgctgacc
gtccattatcaggagaagtatttctcgtcgggtcgcatccccggcggcttcttcaagcgc
gagcgtggcgccaccgagaaggagaccctggtctcccgcctgatcgaccgcccgatccgc
ccgctcttcccggagggcttctacaacgagatcaacgtcatcgcccaggtgctgagctat
gacggcgagaacgagcccgacatcctggcgatgatcgccgcgtcggccgcgctgacgatt
tcgggcgttcccttcatgggcccgatcggcgccgcccgcgtcggctacaaggatggcgaa
taccagctgaacccgaccgacggccaggtcgccgaaggcgatctggatctggtcgtcgcc
gccacccatgacgcggtgatgatggtcgaatccgaagccaaggagctgtcggaagacacg
atgctcggcgccgtgctgttcgcccacaaggcgatcaaggacgtcatcaaggcgatcatc
aagctggccgagaaggccgccaaggatccgtgggagatggccccccaggccgatctgtct
gccgccaagaccaagctgaagaagctgatcggcaaggacatcgatgccgcctacaagctg
accgacaagtcggcccgctcggccgcgctcaacgaggcccgtgccaaggcgaaggcggcc
tttgccgacgccgcgccgcaggaccagatggccgccaacaagctcgtcaagaagctcgag
gccgagatcgtccgtaccgcgatcctcaaggatggccgccgcatcgacggccgcgacacg
aagacggtccgtccgatcgtcgccgaggcgcatttcctgccccgcgcgcacggctcggcg
ctgttcacacgcggcgagacgcagagcatctccacctgcaccttgggcaccaaggaatcg
gagcagatgatcgatggcctgaccggcctgcgctacgagcatttcatgctgcactacaac
ttcccgccctattcggtcggtgaggtcggccgcttcggcgcgccgggccgccgcgaagtc
ggccatggcaagctggcctggcgcgcgctgcacgcggtgctgccgagcaaggaggagttc
ccctacaccatccgtctgacctcggacatcaccgagtcgaatggttcgtcgtcgatggcg
acggtgtgcggcggcagcctcgcgatgatggatgccggcgtgccgatcaagcgcccggtc
tcgggcatcgcgatgggcctgatcctcgaaggcaagaacttcgcggtgatcagcgacatc
ctcggcgacgaggatcatctcggcgatatggacttcaaggtggcgggcacgtccgaaggc
atcaccacgatgcagatggacatcaagatcgccggcatcaccgaggagatcttcaagacc
gcgctgcatcaggccaaggaaggccgcgcgcacatcctgggcgagatggccaaggcgctc
gattcgacccgcaccgagctgtcggcgcacgcgccgcgcatcgagacgatgtcggttccc
aaggacaagatccgcgacatcatcggcaccggcggcaagatcattcgtgagatcgtcgcc
accaccggcgccaaggtcgacatcgatgatgacggcaccgtcaagatttcgtcgtccgac
atcacgcagatcgaagccgcgaagaactggatcatcggcatcgtcgccgagccggaagtg
ggcaagatctacgtcggcaaggtcgtcaacctcgtcgatttcggcgccttcgtgaacttc
atgggcggcaaggacggtctcgtccacgtctccgagatcaagaacgagcgtgtcgagaag
gtggccgatgccctgagcgaaggccaggaagtcaaggtcaaggtgctcgagatcgaccag
cgcggcaaggtccgcctgtcgatgcgcgtcgtcgaccaggagaccggcgaggaactgccc
gacacccgtccgccgcgcgagccgcgtgagggtggcgatcgtggtccgcgtggcgatcgc
ggcgatcgcggccgtggcccgcgtcgcgacggtgatcgcgatcgcggcccgcgccgtgac
ggcggcgaccggggtccgcgcggcgatcgcggcccgcgccgtgagcgttcggaaggcggc
gatgacggccccgcgcccgatttcgcaccggccttcctgaagcgcgacgacgactga
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