Rhizorhabdus dicambivorans: CMV14_23255
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Entry
CMV14_23255 CDS
T05084
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rdi
Rhizorhabdus dicambivorans
Pathway
rdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CMV14_23255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rdi03019
]
CMV14_23255
03009 Ribosome biogenesis [BR:
rdi03009
]
CMV14_23255
Enzymes [BR:
rdi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CMV14_23255
Messenger RNA biogenesis [BR:
rdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CMV14_23255
Ribosome biogenesis [BR:
rdi03009
]
Prokaryotic type
rRNA processing factors
CMV14_23255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ATE66965
UniProt:
A0A2A4FWP0
LinkDB
All DBs
Position
complement(4933043..4935649)
Genome browser
AA seq
868 aa
AA seq
DB search
MTTRMLIDARHREETRVAVVQGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEEEALRAREADHDDDADVIEGE
AHDHDEHDHDHEHGDEEDAPRPRRESVGGGSDDGAVENLRQRRMSLRRRYKIQDVIRRRQ
VLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKSIMTE
LNLPRTMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIRENTLSSSAPALIYGDSDLIKRA
IRDIYNRDIDEVIVEGEEGYRQARQFMKLLMPSHAKKVGLYADAVPLFQRFGVEDQLAAM
YQPVVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAHEIARQLRLRD
MAGLIVIDFIDMENNSNIRKVEKAMKEALKNDRARIQVGRISSFGLFEMSRQRLRTGVLE
ASTRQCPHCEGTGLVRTASSAGLSALRMLEDEAARGRGSRLMLRASQEAALYVLNRKRAE
LAEIEDRYGVVIEILSDGTLEGARMSVEAGGPPPSHAPRLPAPLPIEADDDILDDEIEEE
EIEAEDEEAEGSEDGERGDGGRGRRRRRRRRRGGRGRDQEGQSESGEGAEEGEADEPGET
GEEAEPADAEEGNGEARRGRRRGRRSGRRRGGNGEGVEGAEPTPAEAAEAIMAEELPAAA
TAPVEDAPAEEPAPKARRRPRARKADPVVEAAPVAEEAPAEPVAEAAEAEPVAEAKPKRT
RRKKADAAPEAAEAPAAEPAPAEPVAEEAPAAEAPKRRRSRAKAAPAEAVETVVAEAVAE
AAAEPAESAEEDEGGTPRRGWWQRTFGA
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgaccacccgcatgcttatcgacgcacgccaccgggaggaaacccgcgtggctgtcgtc
caggggaaccggatcgaggaatttgactttgagtccgcagagcggaagcagctcaaggga
aatatctatctcgccaaggtaacgagggtcgaaccgtcgcttcaggcggcgttcgtcgat
tatggcggcaaccgccacggtttcctcgccttctcggaaatccacccggactattaccag
atcccgaaggaggatcgcgaggcgctgctccgcgaggaggccgagcatgccgccgaggaa
gaggcgctccgcgcccgcgaggccgaccatgatgatgacgccgatgtgatcgagggcgag
gcccatgatcatgacgagcatgatcatgaccacgagcatggtgacgaagaggacgccccc
cggccccgccgcgaatcggtcggcggcggttccgatgacggcgcggtcgagaatctccgc
cagcggcggatgagcctgcgccgccgctacaagatccaggacgtgattcgccggcgccag
gtgctgctggtccaggtcgtcaaggaagagcgcggcaacaagggcgctgccctcacgacc
tatttgtcgctggccggccgctattgcgtgctgatgccgaacaccagccatggcggcggc
atcagccgcaagatatcgaacgcggccgaccgcaagcggctcaagtcgatcatgaccgag
ctgaacctgccgcgcacgatgggctgcatcgttcgcaccgccggcctccagcgcaccaag
accgagatcaagcgcgatttcgactatctcgcccggctgtgggacgagattcgcgagaac
acgctgagctcgtcggcgcccgccctgatctatggcgacagcgacctgatcaagcgggcg
atccgcgacatctacaaccgcgacatcgacgaggtgatcgtcgagggcgaggagggatac
cgccaggcgcggcagttcatgaagctgctgatgccgagccacgccaagaaggtggggctc
tatgccgatgcggtgccgctgttccagcgcttcggcgtcgaggaccagttggcggcgatg
taccagccggtcgtccagctcaagtcgggcggctatctggtgatcaatcccaccgaggcg
ctggtgtcgatcgacatcaactcgggtcgctctacgcgcgagcataatatcgagcagacc
gcgaccgcgaccaacctggaagcggcgcacgagatcgcccgccagcttcgcctgcgcgac
atggcgggtctgatcgtcatcgacttcatcgacatggagaacaactccaacatccgtaag
gtcgagaaggcgatgaaggaggcgctgaagaacgatcgcgcccgcatccaggtcggccgc
atctccagcttcggcctgttcgagatgagccgccagcgcctgcgcaccggcgtgctcgag
gcgtcgacccgccagtgtccgcattgcgaaggcaccgggctggttcgcaccgcgtcttcc
gcgggcctgtcggcgctgcgcatgctcgaggacgaggccgcgcgcggccgcggttcgcgc
ctgatgctgcgggcaagccaggaagcggccctttatgtgctcaaccgcaagcgcgccgaa
ctggccgagatcgaggatcgctatggcgtggtcatcgagattctctccgacggcacgctg
gaaggcgcgcggatgagcgtcgaggccggcggtccgccgccgagccatgcgccgcgcctg
ccggcgccgctgccgatcgaggccgatgacgatattctcgacgacgagatcgaagaggag
gagatcgaggccgaggacgaggaggccgagggctccgaggatggcgagcgtggggatggc
ggccgaggccgtcgccgccgtcgtcgtcgccgtcgtggcggtcgtggccgtgatcaggaa
ggccagtccgagtccggcgagggtgccgaagaaggcgaggctgacgagccgggcgagacc
ggtgaggaggccgagccggccgatgccgaggaaggcaatggcgaggcccgtcgcggccgt
cgccggggtcgtcgctcgggtcgtcgtcgtggcggcaatggcgagggtgtcgagggcgcc
gagccgacgccggccgaggccgccgaggcgatcatggccgaggaactccccgccgctgcc
accgcaccggttgaggacgcgcccgccgaagagcccgcgcccaaggcccgtcgccgcccg
cgtgcccgcaaggccgatccggtcgtcgaggccgcgcccgtagccgaggaagctccggcc
gagccggttgccgaagcggcagaggccgagccggtcgccgaggccaagcccaagcggacc
cgccgcaagaaggccgatgccgctcctgaggcggcggaagctccggccgccgagccggct
ccggccgagcccgtcgccgaagaggcgcccgcagcggaagcccctaagcgccgccgctcg
cgtgccaaggccgctccggccgaggccgttgagaccgtcgtcgcggaagcggtggccgaa
gcggctgccgagcccgccgaatccgccgaggaggatgagggcggcacgccgcgccgcggc
tggtggcagcggacgttcggcgcctga
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