Rothia dentocariosa: HMPREF0733_10092
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Entry
HMPREF0733_10092 CDS
T01343
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rdn
Rothia dentocariosa
Pathway
rdn03420
Nucleotide excision repair
rdn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0733_10092
03430 Mismatch repair
HMPREF0733_10092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rdn03400
]
HMPREF0733_10092
Enzymes [BR:
rdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0733_10092
DNA repair and recombination proteins [BR:
rdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0733_10092
MMR (mismatch excision repair)
Other MMR factors
HMPREF0733_10092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADP39550
UniProt:
E3H4T1
LinkDB
All DBs
Position
complement(106206..110555)
Genome browser
AA seq
1449 aa
AA seq
DB search
MDTYRMTTSEPDQPHKHDGDRGASGVSGGTAHQPARLSAREIAHALGLNPPTDEQVRIIE
SPLEPRLVIAGAGSGKTATMVDRVVWLVANKIVRADEVLGVTFTRKAAGELRDRMRTRLN
ILRERNLIELSEEELLAGSSEPTVSTYHSYANNLVKEYGLRLGVEQDAQMLGDAQAWQLA
AQIVQYWDGDLPAASSALGVASKSTIVQSLLQLSGECAEHLVSPQQVIEFCSAHLAAYES
LSSPGPSANAKKVIERLKAKIILAQLVQRYARVKARMQVLDYGDLIALAARIAREVPAAA
QLERERYKVVLLDEFQDTSHAQLRLFADLYGAGDGHDGRPGQPEHPVMAVGDPKQSIYGF
RGASDGQLFSFYQYFPTRDETPLYLTVAWRNDVAILDAANLIAAKLKNIPDWVRAPAPPH
VPDLRPRSVVLNPDESGYRAMLGSVQLARYGSETEEAQGIAERIVQERARYANTPEQMPT
MAVLTRTRAQMEPIRQACESLGVPVQVVGLGGLLERPEIIDMVSMLRVLADPNRSDALMR
LLAGARWRLGTADLLALGDWSNYLTTTREKNMGRTFGEQSSGETSGDVPSSPQTDTDANL
RAAHEEFERVRKNAVEDLAEYGSLIEAIEHLPAADEAGNPIYPADYPESRRRLSVEGLRR
LHAFTAEVEYLRQFTTEDIGTLLYEIERVMLLDIELAARPGGDAYGSRAHLDAFHEVAAS
YAASSPRINAMLYAGADGTEVDEDAPTARRFVLSANGISYLLGFLSWLEQAQNHERGLTP
AEEEPRRDAVQILTMHASKGLEWDHVYLPRMCDKYPTRPHTWHRLEHGSLPWPLRGDRDY
LPSALERAEEVSALENYKELNARLEDGEDMANDYVGFEGRRLVYVAMTRARSLLHISNCR
WVGPNVNPYQPEPYWNELVQFAQGYAEEPYEGIQVAPWLYPGYLGTGFYTSGWAIEHRDA
SIEVLFGRCLWLENYSIPRGIRLENGTSVPVIPAPDDPEDTAASQRYTSAVYEQIAHALV
HDGGNPITNAEVLNLPEVHRVKQALMGGVQEPGLPDPQESKGAYDENLEGLKKRYGLDVV
ENFRYAREPLAQLAQGKQGPEQPGVRPQIVHRFLEPAAWVKDNPQQGSVLTADWPFDPFD
GAQVIRWASEKDLAERTENRDIIAVPGQRRARVERTALNVARGSLSLDELDKLTSPTEAE
AQQIQDWEHEVDLLLALAQRAVTPAVPTKPEHMSASTLIALSEDKETVLSRLVRPVPMQP
SAAARQGTLFHAWVEEYFGDEPMLDIQDELYSDDDLDGSFDLDKLRATFLESEWASRTIW
RAEYPVETHVAGVNIRGRIDAVFRRTEQVTNADGTLQEQEHWDLVDWKTGRKPSAHAMRH
KRIQLALYRLAFAKIQGIDPECVHAAFYYVGSDQTVWDTDIAGGLQNEQQLERIISRAGW
GEELPGRPR
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atggatacgtaccgtatgactacctctgaaccggatcagccgcacaagcatgacggcgac
cgtggcgcatccggagtatccgggggaacagcacaccaacctgctcgacttagcgcccgc
gagatcgcgcacgcgctggggctgaatccgcccaccgacgaacaggttcgcattattgag
tcgccgcttgaaccgcgtctggtgatcgctggcgcgggctcgggaaagaccgcgacgatg
gtcgatcgtgtggtgtggcttgtggccaataaaatcgtgcgcgccgatgaagttctgggc
gttacctttacccgcaaggccgcaggagagctgcgcgatcgcatgcgcactcgcctaaat
attctgcgcgagcgtaacctgattgagctgagcgaagaagaacttcttgcaggatcttcc
gagcccaccgtctctacgtaccactcatacgcgaataatctcgtcaaagaatacggtctg
cgcctgggcgttgagcaggatgcgcaaatgcttggcgatgctcaagcctggcagctcgcc
gcgcagatcgtgcagtactgggacggcgacctgcccgccgccagctcagccttgggagtc
gcctcaaaaagtacgatcgtgcagagccttttgcagctgtcgggggagtgcgccgaacat
ctggtaagcccgcagcaggttatcgaattttgttccgcacacctggcggcgtacgaatca
ctcagttcgcccggtcccagtgccaacgcaaaaaaggtcatagagagactgaaagccaaa
attattttggcgcagcttgtgcagcggtatgcgcgagtgaaagcgcgtatgcaggtgctc
gattacggcgatttgatcgcgttggcggcgcggatcgcccgtgaggtgccagccgccgca
cagctggagcgggagcgctataaggttgtgcttcttgacgaatttcaggatacatcgcac
gcccaactgcggctctttgccgatttatacggagctggcgacgggcatgatggacgtccc
ggccaacctgagcatccggtgatggcggtgggggacccgaaacagtctatttatgggttc
cgcggcgcctcggacggtcagctgtttagtttttatcaatacttcccaacacgcgatgaa
acgcctctttatttgacagttgcgtggcgtaatgacgtcgctattttggatgccgcaaac
ctgatcgccgctaaactcaagaacattcccgattgggtgcgtgccccagctccgcctcac
gtgcccgatctgcgacctcgctcggtggtccttaatcccgatgaatcaggttaccgcgct
atgctcggttcagtgcagttggcacgctacgggtctgagaccgaggaagcgcagggtatt
gccgaacgtatcgtgcaggaacgcgcccgctacgccaatactccggaacagatgcccacg
atggcggtgctcacccgcacccgggcgcagatggaacccattcgccaggcctgcgagagc
ctgggtgttcccgtgcaggtggttggtttgggcgggcttctggagcgccccgaaattatt
gatatggtctcgatgctgcgggtcttagcagacccgaaccgttcagatgccctgatgcgt
ctgctcgctggcgcacgttggcggttgggcacagcggatctgcttgcgctgggggattgg
tcgaattacctgacgaccacgcgcgagaaaaatatgggacgaacctttggcgagcagtcc
tctggggagacgagcggagatgtaccatcgagccctcaaactgataccgatgccaatctg
cgtgccgcccacgaagaatttgagcgagtccgtaaaaacgctgtagaagacctcgccgaa
tacggttcgcttattgaagcgatcgagcatcttcccgcagcagatgaggccggtaacccc
atttaccctgcggattaccccgaatcccggcgccgtctgagcgttgaaggtttgcgccgt
ctgcacgctttcaccgccgaggttgagtatctgcgccagttcaccaccgaggatatcggc
accctgctctatgagattgagcgggtgatgctcctggatatcgagcttgccgcccgcccc
ggcggggacgcctacggatcgcgcgcacatctggatgcctttcatgaggtcgccgcaagt
tacgctgcgagctcgccgcgcatcaatgcgatgctctatgctggcgcagacggaaccgag
gtcgatgaggacgcccccaccgcccggcggtttgtgctctctgccaacggtattagctat
ctgctgggtttcctctcctggctggaacaggcccaaaaccacgagcggggtctaaccccc
gccgaagaggaaccccggcgagatgcggtgcaaattcttacgatgcacgcgtcgaaaggt
ctggaatgggatcacgtgtatctgccacgcatgtgcgataaatatcccacacgtccacac
acctggcaccgcctggaacatggaagcctgccctggcctctacgaggtgaccgcgactat
ctgccgtccgctttagaacgggctgaagaggtgagcgccctagagaactataaagagctc
aatgcgcgtcttgaagacggcgaagatatggcgaatgactatgtgggctttgagggacgg
aggctggtttatgtggcgatgacccgcgcccgctcgctactgcacatcagtaattgccgt
tgggtgggcccgaacgtaaacccctatcagcccgagccttattggaacgagctggtgcaa
ttcgcgcagggttatgctgaggaaccttacgaaggtattcaggtggcaccctggctgtat
ccgggctatctgggcaccggtttttacacctctgggtgggcgatcgagcatcgtgacgcc
agcattgaggtactttttgggcgctgcttgtggcttgagaattacagtattccccggggc
atacgcctggaaaatggtacgtctgtaccggttattcccgctcctgatgaccccgaagat
acggcggcttctcagcgctatacaagcgcggtctatgagcagattgcgcatgcgcttgtg
cacgacggcggaaacccgatcacaaatgccgaggtactgaatctgcctgaagtgcaccgg
gtgaagcaggcgctgatgggcggcgtgcaggagcccggcctgcccgatccgcaggagtcc
aaaggggcatacgatgaaaatctggaagggctcaaaaaacgttacgggctggatgtggtc
gagaatttccgctacgcccgcgaacctttagcgcagcttgctcagggaaaacaaggccct
gagcagccgggggtgcgaccgcagattgtgcaccgtttcttggaaccggcggcgtgggtg
aaagataacccgcagcagggctccgtgttgaccgccgactggccctttgacccctttgac
ggcgctcaggtgatccgctgggcatccgagaaagacctcgccgaacgcaccgagaatcgt
gacattattgcggtacccggtcagcggcgtgcacgggtggagcgtaccgctcttaacgtg
gcgcgcggatcgttaagccttgacgagctcgataaacttactagccccaccgaagcggaa
gctcagcagattcaggattgggagcatgaggtcgatctgcttcttgccttggcacagcgc
gccgttaccccagcggttcccacgaaacccgagcatatgtcggcatccactctcattgct
ttgtcggaggataaagagacggttctgagtcgcctggtgcgcccggtaccgatgcagcca
tctgcggcggcgcggcagggtacacttttccacgcctgggttgaggagtacttcggggac
gaacctatgctcgatatacaggacgaactttatagcgatgacgatcttgacggcagtttc
gaccttgataaactgcgcgcgacatttcttgagagtgaatgggcttcccgcaccatatgg
cgcgcagaatacccggtggaaactcacgtggcgggcgtgaacattcgcgggcgtattgat
gcagtcttccgccgcaccgaacaggtcactaatgccgacggcaccctccaggagcaggaa
cactgggatctcgtggactggaaaaccgggcgtaaaccctccgcacacgctatgcggcat
aagcgcatccagctggcgctataccggcttgccttcgccaaaatacaggggatagaccct
gaatgtgtgcacgcggcgttctactatgtgggctccgaccagaccgtgtgggacaccgat
attgccggtggtctgcagaacgaacagcagcttgaacgcattatctcccgcgccggatgg
ggtgaagaacttccggggcggccgcggtag
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integrated database retrieval system
