Rothia dentocariosa: HMPREF0733_11683
Help
Entry
HMPREF0733_11683 CDS
T01343
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rdn
Rothia dentocariosa
Pathway
rdn03030
DNA replication
rdn03430
Mismatch repair
rdn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0733_11683
03430 Mismatch repair
HMPREF0733_11683
03440 Homologous recombination
HMPREF0733_11683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rdn03032
]
HMPREF0733_11683
03400 DNA repair and recombination proteins [BR:
rdn03400
]
HMPREF0733_11683
Enzymes [BR:
rdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HMPREF0733_11683
DNA replication proteins [BR:
rdn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HMPREF0733_11683
DNA repair and recombination proteins [BR:
rdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HMPREF0733_11683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
ADP41140
UniProt:
E3H0X3
LinkDB
All DBs
Position
1863009..1866551
Genome browser
AA seq
1180 aa
AA seq
DB search
MAKKGFAHLHVHTEYSMLDGAARLGDLFQYARELGMDSMATSDHGFLFGAFDFWRQAKAN
DIKPIIGVEAYLTPGTHRTDRSRVRWGDGSRDDVSGGGAYTHMTMWAETTEGMHNLFRAS
SVASLEGQLYKPRMDREVLQTYSKGLIATTGCPSGEIQTRLRLGQYQEAVAAAAEFRDIF
GKDNFYCEVMDHGLDIERNVQADLHRLAKELNLPFVATNDLHYTRQEDHTAHAALLCVQS
GSTLTDPKRFKFDADNFYLRSPEEMYQIFGDVPGACENTLEIAERCNVEFNTKANYMPNF
PVPEGENEESWFVKEVERGLHYRFPNGVPDKVREQAEYEVGVITSMGFPGYFLVVADFIN
WAKNNGIRVGPGRGSGAGSMVAYAMRITDLNPLNHDLIFERFLNPDRVSMPDFDVDFDDR
RRAEVIDYVTEKYGEDKVAQIVTFGTIKAKQALKDASRVMDQPYSVGERLTKAMPPDVMG
KNIALANVYNPEDKRYSEAGDLRALIEDPVDKIYGEVFETAKGLEGLKRQWGVHAAGVIM
SSKNLTDVIPVMRREADGQVITQFDYPTCEGLGLIKMDFLGLRNLTIISDALDNVKMNRG
IEIDLENLEVDDKESYRLLARGDTLGVFQLDGGPMRSLLKLMEPEEFEHISAVLALYRPG
PMGANSHTNYALRKNGKQEIQPIHPELEEPLAEILDTTYGLIVYQEQVMAIAQKVANYTL
GEADLLRRAMGKKKKAELDKQYEAFHDGMISNGYSEGAVKALWDILLPFSDYAFNKAHTA
AYGLVSYWTAYLKAHYPQEYMAALLTSVGDNKDKLALYLNECRAMGITVLPPDVNESTLT
FAPVGKDIRFGMGAIRNVGANVVDGMIAAREEKGHFESFNDFLKKVPLVVCNKRTIESLI
KAGAFDELKHTRRSLSLVHESAVDAAVSVKRKEAAGQFDLFGSLGMDDALGDDLSVTVPD
IPDWERREKLNFEREMLGLYVSDHPLRGLERALSDAATASVHDIIDEDSHIRDGEVVTIA
GMLTSVSRRIAKSSGNQYASVELEDSSGATLTVMFFSRAYETMGNALADDLICSIKGRIQ
RRDDGSVNMSAQEMQILELSDDGRGAPITISVPEYHVTEDRLKELKDVLRDHRGNVDVRM
LLRTRDKEQLVLLDSSVRVDPNPSLFGEIKTIFGPSCIRR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
gtggctaagaagggcttcgcgcatctgcacgtgcataccgaatattccatgctggacggc
gctgcccgcctaggcgatctctttcaatacgcacgggaactcggaatggactctatggcc
actagcgaccacgggttcctttttggtgctttcgacttttggcgtcaagcgaaggccaat
gacattaaacccattatcggtgtggaagcgtacctgactcccggaacccaccgtaccgac
cgttcacgtgtgcgctggggcgatggctctcgcgacgatgtttccggtggtggtgcatac
acccatatgactatgtgggcggaaaccaccgagggcatgcacaatcttttccgcgcatca
tctgtcgcctcactggaaggccagctgtacaagccgcgtatggatcgcgaagtactgcaa
acctactctaaagggctcattgccacgaccggatgtccttccggagaaattcagactcgt
ttgcgtttggggcagtaccaagaggcagtcgccgcggcagcagaattccgtgacattttt
ggcaaagataacttctattgtgaggtcatggatcacgggcttgatatcgagcgtaatgtg
caagcagatctgcaccgtctggccaaggaactcaacctgccgtttgtcgcgacgaacgat
ctgcactacactcgccaagaagatcacaccgcgcacgctgcacttttgtgcgtgcagtct
ggttcgaccctgaccgaccctaaacgctttaaattcgatgcggacaacttctacctgcgc
tcgccggaagagatgtatcagatattcggcgatgttccgggtgcctgcgaaaacactctt
gaaatcgccgaacgatgcaacgtcgagttcaataccaaagcgaactatatgccaaacttc
cctgtacccgagggagagaacgaagaatcctggttcgtgaaggaagttgaacgaggactg
cactaccgattccccaatggcgtgcccgataaggtacgtgaacaagcggaatatgaggta
ggcgttattacctccatgggattccccggatacttcctggtggtggctgactttatcaac
tgggcaaagaacaacggtatccgtgtgggcccagggcgtggctccggcgcaggctcgatg
gtcgcctacgccatgcgtattaccgatctgaacccgctcaatcacgatctgatttttgag
cgcttcctcaatcccgaccgcgtgtcaatgcccgacttcgacgtggactttgacgatcgc
cgccgtgccgaagtgatcgactatgtgaccgagaaatatggcgaggacaaagttgcacag
atcgtcaccttcggaactattaaggcgaagcaggcgctcaaagatgcttctcgcgtgatg
gatcagccttattcggtaggtgagcgcctcacgaaggcgatgccgccggacgttatgggt
aagaacattgcacttgccaatgtgtataaccccgaagataagcgctactccgaggcgggc
gatctgcgtgcacttatcgaggatccggtcgataagatttacggcgaagtcttcgagacc
gcaaaaggtctggaaggtctgaaacgtcagtggggcgtgcacgccgcgggcgttatcatg
tcgagcaaaaacctgactgacgtgattcctgtgatgcgccgcgaggctgatggacaggtt
attacccagtttgattaccccacctgtgaaggtctgggtcttatcaaaatggacttcttg
ggtcttcgcaacttgacgattatttctgacgcactagataacgtcaagatgaaccgcggt
atagagatagaccttgaaaacctagaggttgatgacaaagagtcctaccgcctactggcg
cgtggtgacaccctaggcgtattccagctcgatggcggtccaatgcgcagcctgctcaag
cttatggagcctgaagagttcgagcatatttccgctgtgcttgccctgtaccgccctgga
cctatgggcgcgaactcgcatacgaactatgcccttcgtaagaacggtaagcaagagatt
cagccgattcaccccgagcttgaagagcctcttgccgagattcttgatactacctatggc
ctgatcgtatatcaggagcaggtgatggcgatcgcccagaaggttgcgaattatacgctg
ggtgaagcggatctgctgcgccgcgcgatgggtaagaagaagaaagctgagctggataaa
caatatgaggctttccacgatggcatgatttctaacgggtactcggagggcgcagttaag
gctctgtgggatattctgcttccgttttccgattacgcattcaacaaagcccatactgcg
gcatacggtttggtatcgtactggaccgcctatttgaaggcgcattatccgcaggaatat
atggcggctctgctaacgagtgtgggcgataacaaggataagctggctctgtacctcaac
gaatgccgtgccatgggtattaccgtgctgcccccggatgtgaacgaatccaccctgacc
tttgcgcctgtggggaaggatatccgtttcggtatgggcgctattcgtaacgtgggcgca
aacgtggtcgacggcatgattgcagcccgcgaagagaaggggcactttgagtcttttaac
gacttcctgaagaaagttccgctggttgtgtgtaataagcgcaccatagaatcgctgatt
aaggcgggtgctttcgacgaactgaaacatactcgccgttcgctttcgctggtacacgag
tcggcagtggacgcggcggtctccgtaaagcgcaaagaggcagcaggccagtttgacctc
ttcggctccctgggtatggatgacgcactcggtgacgatctttcggtgacagttccagat
attcccgactgggaacgccgcgagaaactgaatttcgaacgtgaaatgctgggtctgtac
gtctccgatcatccgctgcgcggtctggaacgtgcgctttcggacgcggcaaccgcatct
gtgcacgatattatcgacgaggactcgcatattcgcgacggcgaagtggtaacgatcgcg
ggcatgctcacgagtgtttcgcggcgtattgccaagtcgagtggtaatcagtatgcttcg
gtagagcttgaggactcatcgggtgctaccctgaccgtcatgttcttttcccgtgcatat
gagacgatgggcaacgccctggcagatgacctgatttgttctattaagggccgtattcag
cggcgtgatgacggcagcgtgaatatgagtgctcaggaaatgcagattcttgagctgagc
gatgatggtcgcggcgccccgattacgatttcggtgcccgagtaccatgtgacggaggac
cgtcttaaagagctgaaggacgttctgcgtgatcatcgcgggaatgtggatgttcggatg
ctcctgcgcactcgcgataaagagcagctggtccttctggattcgagtgtgcgagttgat
cccaatcccagcctctttggtgagattaagacgattttcggtcccagctgcattcgccgg
tag
DBGET
integrated database retrieval system
