Rothia dentocariosa: HMPREF0733_11699
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Entry
HMPREF0733_11699 CDS
T01343
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rdn
Rothia dentocariosa
Brite
KEGG Orthology (KO) [BR:
rdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rdn03019
]
HMPREF0733_11699 (hrpA)
Enzymes [BR:
rdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HMPREF0733_11699 (hrpA)
Messenger RNA biogenesis [BR:
rdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HMPREF0733_11699 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
HA2_N
T2SSE
nSTAND3
AAA_30
SLFN-g3_helicase
DUF3364
DUF601
Motif
Other DBs
NCBI-ProteinID:
ADP41156
UniProt:
E3H168
LinkDB
All DBs
Position
complement(1882975..1887414)
Genome browser
AA seq
1479 aa
AA seq
DB search
MSEQKPTEHTDTPKTTRTAPSMASMAAAIHAAPVRAPQKPARTSQISGEKPGDASTAEPG
AKRDTSHKNSSRKNNASRSKNPQKRAHHKNHRDRPEQRPYNPLIPAEITYPEELPVSERR
EDIKTAIRDHQVIIVAGETGSGKTTQLPKMCLELGLAEKGMIGHTQPRRLAARSVAERIA
EELGQKIGETVGYQVRFTSEVGENSAIKLMTDGILLAEIQHDKLLRKYSTLIIDEAHERS
LNIDFILGYLKRILPKRPDLKVIITSATIDPERFARHFAPSFVPGKGVVDDSLSDEEREL
AEQILPDDAPPIIEVSGRTYPVEIRYRPLDGDDYADEDEGDEDRDPTDGILAAVEELSKG
APGDILIFFSGEREIRDAHDALESLVAKSPRMNYEVLPLYARLSLAEQHRVFTPGSRPRI
VLATNVAETSLTVPGIKYVIDTGTARISRYSARTKVQRLPIERISQASANQRSGRCGRVS
DGIAIRLYSEEDFASRSEFTDPEILRTNLAAVILQMIAIGVVREPGDIARFPFVQPPASR
AINDGVNLLRELGALSEKPARTDKRGKHHRATSTLTATGRAMSAFPVDPRLARMIIEGSR
RDCAKEMMVLAAALTIQDPRERPAEVRGTADEMHARFTDDKSDFSSFLLLWQYINERQAE
LSSSQLRKMCHREFINFLRIREWQDLFAQLREMGRTANIRVSNGRDIDASGREVEIHKSL
LSGLLSHVGAKEEREKTYGKAPRGPREYLGARGTKFAIFPGSGLFKQNPDWVLSAELVET
SRLWARTNAAIEPQWVEEVGGHLLKKQYSEPHWSASRGAAVAYTKGTLYGLTIYADRPVQ
YSRVDAAAAREIFIRSALVEGDWRTQHKFYKRNLRALAEVEELEARLRRRDLRVDDAVLF
EFYNARIPEHVTDVRSFDKWWKHARLENDNLLDFNPENLINEDAADYDDSQFPRQWVQRT
DGGELTLDLRYEYAPGAGLGGARTDAAKRDGVAVQVPILFLNQLTPEPFRWQIPGMRHEL
LTALIKSLPKAIRRNFVPAPDVARMALESLEADYSPATDELLPSFALVLRRLRGVVVEPD
AFDWKSVPDHLKFTFQVRDARNKILGESKDIRELQQKLHAQIRSALADSLGASEDTVAKM
AALAGGNSAQGASSQTGSAQQGAQENSSDPGAKPEKTAAQGIGSQDSIRETTGLTDFPGE
EIPRKVQRIIATQAVSGYPALVDEKTSAGIRIFPTEAEQVNSQRRGIIRLLQLQVPSPER
YVSDHLSNKEKIVFTQNPHGSIDELIRDCTVAALDKLVPHTPVFTRAEYRELFEQVRAEL
IDTVFEVTKLVAEILSEAAALRKAIKKATSLSTMHAVSDVKGQLDNLVYPGFVANTGYDQ
LVHLPRYLKAAQIRLTKLGPNLNRDNQLMLTVQDLEDSYDSAIKSLPEGTLIPDALARVN
WMLEELRVSFFAQELGTAYTVSEKRIAKAQREALEQVKR
NT seq
4440 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcagaaacccaccgaacacacagatactcctaagaccactcgaaccgcgccc
agtatggcgagcatggcggctgccattcatgcggcgccggtgcgcgcacctcaaaagccc
gcgcgcacatcccaaatatccggtgagaaacccggcgatgcttccacagcagagccaggt
gcaaagcgggatacttcccacaagaattcctcgcgtaaaaataacgcttcacgctccaaa
aacccgcaaaaacgcgcgcatcacaagaaccaccgggaccggcccgaacagcgtccctac
aacccgctgattcccgctgagattacctatcccgaagaactgcccgtcagcgagcgccgc
gaagacattaagacggctattcgtgatcaccaggtcatcattgtcgctggcgagaccggc
tcgggtaagaccacgcagttgcccaagatgtgcttggaactcggtcttgctgaaaaaggc
atgattgggcacacccagccgcgccgccttgccgcacgttcggtggcggagcgcatcgcc
gaagaactggggcagaaaattggtgagaccgtgggttaccaggtgcgtttcacctctgag
gtgggcgagaacagcgctatcaaactcatgacggacggtattctgctcgccgaaattcag
cacgataagctgctgcgcaagtattccacgctcattattgacgaggcacatgagcgcagc
ctaaatattgattttattctggggtatctgaagcggattctgccgaagcgccccgatttg
aaggtcattattacctccgcaaccattgatcctgaacgattcgcgaggcatttcgcaccg
agtttcgtgccaggtaagggtgtggtagacgattctctcagcgatgaggaacgtgagctt
gccgagcagattcttcccgatgatgctcccccgattattgaagtttcggggcgcacctac
ccggtggagattcgctaccgcccgctcgatggggacgactacgctgatgaagatgaaggc
gacgaagaccgtgacccaaccgatggaatccttgccgccgttgaggagttgtcgaagggg
gcgcccggcgatatcctgattttcttctcgggcgagcgtgaaattcgcgatgctcacgat
gctttagagtctttggttgccaagtccccacgtatgaactatgaggttctgccgctgtat
gcgcgtctgtctctcgcggagcagcatcgtgtgtttacgccggggagtcggccgcgcatc
gtgctggcgacgaacgttgcggaaacttcgctgacggtgccgggtatcaagtatgtgatc
gataccggtaccgcccgcatttcgcggtattcggcgcgcacgaaggtgcagcgcctgccg
atcgaacggatttcgcaggcaagcgcgaaccagcgctcggggcggtgcggccgtgtgagc
gatggtattgcaattcggctgtattctgaggaggatttcgcgtcgcgcagcgagtttacc
gacccggagattctgcgcacgaacctggcggccgttattttgcagatgattgcgatcggc
gtggtgcgtgagcccggcgatattgcgcgtttcccgtttgtgcagccgcccgcatcgcgc
gcgattaatgacggcgtgaatctgctacgtgagcttggggcgctttctgaaaaaccggcg
cgcacggataagagggggaagcatcatcgtgctacctcgacgctgaccgctacggggcgt
gcaatgagtgcgttcccggttgatccgcgcttggcgcgcatgattattgagggttcgcgc
cgtgactgtgctaaagagatgatggttcttgccgctgctttgacgattcaggatccgcgt
gaacgcccggctgaggtgcgtggcaccgccgatgagatgcatgcccgtttcacggacgat
aaatctgatttttcgtcgttcctgctgctgtggcagtacattaatgagcgccaggctgag
ctttcctcttcacagctgcgaaagatgtgccaccgcgagtttattaactttctgcgtatt
cgtgagtggcaggatcttttcgcccagctgcgcgagatggggcgcaccgcgaatatccgc
gtgtcgaacgggcgcgatattgacgcgtcggggcgtgaggttgagattcataagagcctg
ctttcgggcctgctctcgcatgtgggcgctaaggaggagcgtgagaaaacctacggcaaa
gccccgcgtggcccgcgtgaatatctgggggcgcgcggcacaaaattcgctatcttccca
ggttcagggcttttcaagcagaaccctgactgggtgctttctgccgagcttgtggagact
tcccggctgtgggcgcgcacaaacgccgcgattgagccgcagtgggttgaagaagtgggc
gggcacctgctgaaaaagcagtattccgagccgcattggtcggcaagccggggcgccgcc
gtggcgtatacgaagggcacactgtacgggctgacgatttatgccgaccgcccagtgcag
tattcccgggtagatgccgccgctgcacgtgagatttttattcgttccgccctggtggag
ggcgactggcgcacccagcacaagttctacaagcgcaacctgcgtgccctggctgaggtt
gaggagcttgaggcccgcctgcgccgccgagatctgcgagtggatgacgccgtgcttttc
gagttctataatgcgcgcatccccgagcatgtgacggacgttcgttccttcgataaatgg
tggaagcacgcgcgtttagaaaacgataacctgctcgatttcaacccggaaaaccttatt
aatgaggatgccgccgattatgacgattcgcagttcccgcgccagtgggtacagcgtact
gacggcggcgaactcaccctggatttgcggtacgaatacgccccgggggcaggtttgggc
ggtgcccgcacggatgcggcaaaacgcgacggcgtggcggttcaggtaccgattctgttc
ttgaaccagctgactcccgagccgttccgctggcagattccggggatgcgccatgaactt
ttaacggcactcattaaatcgcttccgaaggcgattcgccgtaattttgtgcccgccccg
gatgttgcacgcatggcgttggagtctctggaggctgactactcccccgcgaccgacgag
cttttgccctcgttcgcactggtgctgcgtcgtctgcgcggcgtggtggttgagccggat
gcattcgactggaagtccgtgccggatcatctgaagttcacgttccaggtgcgcgatgcc
cgcaataagattctgggcgaaagcaaagatatccgtgaactgcagcaaaaactccatgcg
cagattcgctccgccctggcagattcgctgggtgcttctgaagatacggtggcgaagatg
gcggcgctcgcaggtgggaactccgcgcagggggcctcatcgcaaaccggttcggcgcag
cagggcgcgcaggaaaacagctcagatccgggcgcaaaacccgagaaaaccgccgctcaa
ggtataggatcgcaagattctatccgtgagaccacgggcttgactgactttcccggcgag
gagattccgcgcaaggtacagcgcattattgcgacccaggcggtcagtggatacccggcg
ctggtggacgaaaaaacgagcgcgggcatccgtattttccccaccgaggccgagcaggtg
aattcgcagcggcgcggtattattcgtcttctgcagctgcaggtgccctcacctgagcgg
tacgtaagcgatcacctgtcaaataaagagaagattgtgttcacacagaacccgcatggt
tcgattgatgagctgattcgggactgcacggttgccgcgctcgacaagctggtgccgcat
acgcccgtgttcacgcgtgccgagtaccgcgagctgttcgagcaggtgcgcgccgaacta
atcgataccgtctttgaggtcaccaagctggttgccgaaatcctctcagaagcggcggcg
ctgcgcaaagccattaagaaagcaacctcattgagcaccatgcacgccgtctcagacgtg
aaggggcagctcgataatctggtgtaccccggattcgtggcgaacaccgggtacgatcag
ctggttcacctgccgcgctatctgaaggcagcgcagatacgcttgacgaagctgggaccg
aacctgaaccgagataatcagctcatgctcacggtgcaggatttagaggattcctacgat
tctgctatcaagtcgctgcccgaggggactcttattcccgatgcgctcgcccgcgtgaac
tggatgcttgaggaactgcgcgtgagcttcttcgcccaggaactcggcacggcgtacacg
gtctctgagaagcgcatcgccaaggctcagcgcgaggcgctggagcaagtgaaaaggtag
DBGET
integrated database retrieval system
