Rothia dentocariosa: HMPREF0733_12071
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Entry
HMPREF0733_12071 CDS
T01343
Name
(GenBank) S1 RNA binding domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rdn
Rothia dentocariosa
Pathway
rdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMPREF0733_12071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rdn03019
]
HMPREF0733_12071
03009 Ribosome biogenesis [BR:
rdn03009
]
HMPREF0733_12071
Enzymes [BR:
rdn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HMPREF0733_12071
Messenger RNA biogenesis [BR:
rdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMPREF0733_12071
Ribosome biogenesis [BR:
rdn03009
]
Prokaryotic type
rRNA processing factors
HMPREF0733_12071
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ADP41528
UniProt:
E3H393
LinkDB
All DBs
Position
complement(2318165..2321779)
Genome browser
AA seq
1204 aa
AA seq
DB search
MADEKNAHQSSMNMDVLADMISLADKQDVSGETMRTHQEKNNTRVEKQTDSLKDSESAVL
AAPRRKNSSRAKKVAEPTPEDAVAAGLTDLRNQKAKHAPAPRKTVAAASAEEVANTLDTL
FTQAAEPAASADETMPQPESQKTEIRDSSAENLASPEVDTEVSELAEQAEVAEPVSDNRE
EAQTEEAAQEDKTAMISSEENTEDADEPHTIQSEELVAENDEDSEPQATYDVEEDEAETS
EPTDEESAASTFEDEESDEEETAEPAKTLRDVQNEKIAQLRESVRPGAMPLFYSPEPTEL
SELASAVAVERERLRAERLEQERRDRMERRREEAAAEAEVTSHRRRRRRRGTEDIEIEGN
ADDEVETVTKVRTPRLADSHASDTVTGVRGSTRLEAKRARRRESRSLGRRRHIVTEAEFL
ARRESVDRQMLVRQKEGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEA
AFVDIGRGRNAVLYAGEVNWDVTGLDGAPRKIENALKPGDSVLVQVTKDPIGHKGARLTS
QVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKDKLPDGAGVIVRTAAEGASEEEL
THDINRLRAQWEEIQEKANSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTSMIVQGQSAWD
SIEAYVTYVAPDLLSRLQKWEDEDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEAM
TVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDL
VLRRLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEQCDSCGGRGLLVHDQP
LSGRSGGASDFIHRQERTERKRSRAASRNNTRDAADGVDSEKDEKKAERRNAMASIAAAS
HSADELEAEDQANRKKRKRRKRSRRTETAELSLEQEIQGIKAGAKAHREVSSREDKVAEV
TETDWIGEQGDFTLEQLAGAFDRDLNPEHDARFTRESSRSEAIRAGEAKARASQKAGRIT
RSESGGFKSNQGDQSSAEQKSPRAERENLQVEDVHESPRKRRRSRRSSEKERSGRGQEQR
AEESASTPRVSGVIGGAPRVSGVITPGGSASNSVDTQNDKDGSQQKIAAPAASSAPRKRR
SRRAASSAGVQSKVVTVDATESAHGSVVASASVADAKAPVESEAPTLFGIGVSAADIKRV
GKED
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgaaaagaacgcccatcaatctagcatgaatatggatgttcttgctgacatg
atctctctcgctgataaacaggatgtctccggcgagacgatgagaactcatcaggaaaaa
aataatacccgggttgaaaagcagacagattccctgaaggatagtgaatctgcagtatta
gcagcaccgcgtcgtaaaaactcatcgcgcgctaagaaagttgctgaacccacgcccgaa
gacgctgttgcggctggattaacggatttacgcaatcagaaggctaagcatgcccctgca
ccaaggaagactgtggctgcggcctctgccgaagaagtagcgaacactcttgatactctt
tttacccaagccgccgagcctgcagcatcagctgatgaaactatgccccaacccgaatct
cagaaaactgaaatccgcgattcttctgccgaaaaccttgcttctcccgaggtggacact
gaggtgtccgaacttgccgaacaggctgaggtagcagagcctgtctctgataaccgtgaa
gaagcccagactgaagaagctgctcaagaagataagacagccatgatatcttcggaagaa
aacaccgaagatgctgacgaacctcataccatccagtcagaggaattagtggcagagaac
gatgaagactctgagcctcaagcgacctacgacgttgaagaggatgaagctgagacttct
gagccgacagacgaagagagcgctgccagcacattcgaagatgaagagtcagacgaagag
gaaacggcggagccagcaaaaactttgcgtgacgtacagaatgagaagattgcgcagttg
cgcgaatcggtgcgcccgggcgctatgcctctattctattcgcccgaacctactgagctt
tctgagcttgcttctgcggttgctgtggagcgtgagcgtttgcgtgccgagcgtttggaa
caagagcgccgcgaccgtatggagcgccgtcgtgaagaggcagcagctgaagctgaggtg
acgagtcaccgccgtcgccgtcgccgtcgtggaaccgaagatatagaaattgaaggtaac
gccgacgatgaggttgagaccgttaccaaggtccgcactcctcgccttgcagattctcat
gcttctgacaccgtgactggcgtgcgtggttctacccgtcttgaagctaaacgtgcgcgc
cgccgcgagtcccggtcgctgggtcgccgtcgtcacatcgtgaccgaggcagagtttttg
gcgcgtcgcgagtcagtagatcgtcagatgcttgtgcgccaaaaagaggggcgcattcag
attggagttctcgaagacggcgtgctggcagagcactttgtctctaaaacccagcaggat
tccttgattgggaacgtttaccttggcaaagtgcagaatgttcttccgtccatggaggca
gcattcgtcgatattgggcgtggtcgtaacgctgttctctatgcgggtgaagtgaactgg
gatgttaccggtcttgacggtgcaccccgcaagatcgagaatgcacttaaaccgggcgat
tccgtgctggtgcaggtgaccaaagacccaatcggtcataagggcgcgcgtttgacgagt
caggtttcgcttcccggtcgcttcttggtgtatgtgcccggtggctcaatgaccggtatt
tcacgtaagctccccgatactgagcgtgcacgtctcaaaaagattttgaaggataagctg
cccgatggcgcaggcgtgattgtgcgtactgcagcggaaggcgcatccgaagaagagctg
acccacgatattaatcgcttgcgcgcgcagtgggaagagattcaggaaaaagcgaattcc
cgcaaggtgcttgcccctgaaatgctttatcaggaacccgacctgatgattaagaccgtg
cgcgatgtcttcaacgaggatttcacctctatgatcgtgcaaggccagagcgcatgggac
tctattgaggcctacgtgacctatgttgcccctgatctgctctcacgcctgcagaagtgg
gaagacgaagatgatcttttcgaccattaccgcattaatgagcagctggcgaaagcacta
gaccgcaaggtatatcttccttcggggggttccctggtaatcgaccgtaccgaagctatg
accgtggtagatgttaacaccggtaaatttaccggtagcggcggtaaccttgaagagacc
gtcaccaagaataacttggaggcggcagaggagatcgtgcgtcagctgcgtctgcgtgat
attggcggcattattgttatcgactttattgatatggtgcttgaatcaaaccgtgatctt
gtgctgcgtcgtctgatcgagtgcctggggcgtgaccgcactaagcaccaggttgctgaa
gtaacctcgctgggtcttgtgcagatgacccgtaaacgtttgggaacaggtcttcttgag
gtcttctctgagcaatgtgactcatgcggtggccgcggtttgctggtgcacgatcagccg
ttaagcggacgttccggcggtgcctccgatttcattcaccgtcaagagcgcaccgaacgt
aagcgttcacgagcggcttcgcgcaataatacccgtgatgccgctgatggcgtggactca
gagaaggacgagaagaaggcagagcgccgcaacgctatggcctctattgctgcagcctcg
cactcggctgacgagcttgaagctgaggaccaagcaaaccgtaagaagcgtaaacgtcgt
aagcgctctcgtcgtaccgaaactgccgagctttcgctggagcaggagattcaaggcatc
aaagcgggagcgaaggcacaccgcgaagtctcatcccgtgaggacaaggttgctgaggta
accgagaccgattggattggtgagcagggtgacttcacattggaacagcttgctggggca
ttcgatcgtgatttgaacccagaacatgatgctcggtttacccgcgagtcttcccgttcg
gaggctatccgcgctggagaggcgaaggctcgtgcctcacagaaggctggccgcattacc
cgcagcgagagcggtggatttaagtcaaatcaaggtgaccagtcttcagcagagcagaag
tcgcctcgcgccgagcgtgagaatctgcaggttgaagatgtgcacgagagcccacgtaag
cgccgccgttcgcgccgttcctctgagaaggagcgttcaggtcgagggcaggagcaacgt
gcggaagagtcagcttcgaccccccgtgtaagcggtgttattggcggtgcgccgcgtgtg
tccggtgtgattacccccggcgggtctgcctctaactcggttgatactcagaatgataaa
gatggttctcagcagaagatagctgcgccagctgcttcatctgcaccgcgtaaacgtcgc
tcccgtcgagccgcttcgtcggcgggcgtacagtcgaaggtcgtgacagtggacgccacc
gagtcggctcacggttcggtcgtggcttcggcttctgtggcagatgcgaaagcacccgtc
gaatctgaggctccgactcttttcggtatcggtgtttctgctgcagatattaagcgggtt
ggtaaggaagactaa
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