Rothia dentocariosa: HMPREF0733_12213
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Entry
HMPREF0733_12213 CDS
T01343
Name
(GenBank) exonuclease SbcCD, C subunit
KO
K03546
DNA repair protein SbcC/Rad50
Organism
rdn
Rothia dentocariosa
Brite
KEGG Orthology (KO) [BR:
rdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rdn03400
]
HMPREF0733_12213
DNA repair and recombination proteins [BR:
rdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HMPREF0733_12213
Archaeal homologous recombinant proteins
HMPREF0733_12213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
nSTAND3
AAA_16
ABC_tran
AAA_11
AAA_25
Atx10homo_assoc
Motif
Other DBs
NCBI-ProteinID:
ADP41670
UniProt:
E3H430
LinkDB
All DBs
Position
complement(2497087..2500278)
Genome browser
AA seq
1063 aa
AA seq
DB search
MIFHRLEFEAFMAYPKREVIDFDALNEAGIFLLNGPTGSGKTTVLDAICYALYGMPSSGR
DTGSLCSTHVPPGKIKPHIFLELSIQNRRLRIDRTPAYRRLITRGKNKGTPTLENPQALV
SELIPGRDPQDEQSWRKAAEGMADSADYLTKLIGLNREQFLKVMLLPQGQFADFLKARSK
DRIPLLKQLFPVDTYEQVMNRLREKEQISERAVQDIKHALDRTLEQTVTTYTKLCERLSR
SGTDLDDNKNIVDAQEREVSEAHTKLGLATDLETARHDFEGWFTEHLHAVRQQEQQDEHA
LTDLKHKREKLAAQQQDIAQRIQDWAEYEKLQSAWARHESQEEEHKKQCRTLSNSRAAAP
VEAELERSRRDEERRMHAAEHAQDTLNMARSSASQALEALGDCTEHLEASLYRIDTAQDL
QRVLNQAPSVMAQLRVYQHDEQALEETKAALTALKRDSEKAQRTVDGIAKRELQSQQKLS
DISKRLSSLHDVEQNYARAQLALETAKKTQQEVAAQAEKLEQAQAAHDQAVQAYELIQRV
SITASEEYTRLQKRRLEQVAFTLAEELDEGQPCMVCGSREHPQPAQPSVNGITLVEQSEI
DAAEERAHREQQKASVAATSVAQTQAVMDQLKEFHIPDSQEAQRQVTEVQNIYNQAQEAL
KHKREAQHQQEKETLELQKISEEQTQARTSLTQLQTQQASEQQTLKKLEKKLCQVVATIS
FADRVRMLESYVEQAHRAVDASRRLDDATISAAESAHQAQQSLERSVFETFEAVQQAVLT
EVQQQHLEQAISAYREEHATLQASLDRPAMRTVATLIEHGQKAPSQEELTRIRQERDNVE
QQYETLMTREGIRTNGIETLESLLQDYQEQQGESAHAVEQANLYAGLASIARGDNPDKNH
QIDLVSYVLGGEFEQVLQVASEHLQRMSDNRYRLVLSDKREKRARIGGGLSISVEDNWNN
DQREVNSLSGGESFLASLSLALGLAEVVQARNGGIEIETLFIDEGFGTLDAQTLELVMET
LENIRENGRVIGLISHVEDMKERISAQVSIEKRQNGSTLRVNV
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgatttttcatcgcctagaatttgaagcattcatggcctaccccaagcgagaggtcata
gactttgatgccctcaacgaagccggtatttttcttcttaatggtcccaccgggtcggga
aaaacgaccgtactcgacgctatctgttatgcactgtacggaatgccctcttcagggcga
gatacaggttctttgtgctctacccatgtgccccctggaaaaataaaaccccatattttt
ctggagttgagcatacagaatcgtcgtctaaggatcgaccgaaccccagcgtaccgtcgg
ctcatcacacgcgggaaaaataaaggaacacccaccctcgaaaatccgcaggcattagtt
tctgaacttatcccgggcagagacccgcaggatgaacaatcctggcgtaaagcagcggag
ggcatggcagactcggcggactacctgacaaaacttataggactcaaccgagaacaattc
ttgaaggttatgctcttaccgcaggggcagttcgcagattttcttaaggctcgcagtaaa
gaccgaattccgttgcttaaacagctttttccggttgatacctatgaacaggtaatgaat
aggcttcgagagaaagaacagattagtgagcgtgctgtacaggatattaaacatgcttta
gacaggactcttgagcagaccgtcacgacgtacacaaaactatgtgaacgactttcgcgc
agcggcacagaccttgacgacaacaaaaatatcgttgatgcgcaggagcgtgaagtttct
gaagcacataccaaacttggcctagcgaccgatcttgagactgcacggcatgatttcgag
gggtggttcacggagcatcttcacgctgtacgccagcaagaacagcaggatgagcacgcc
ctgaccgacctcaaacataaacgtgaaaaacttgccgcgcaacagcaggacatagcccag
cgaatacaggattgggcggaatatgagaaactgcagtcggcatgggcgcgacacgaatcc
caggaagaggaacataagaaacagtgccgaacgctcagtaactctcgggcagcagcccct
gtggaggctgaactggaacgttctcgtcgtgatgaggaacgccggatgcacgccgccgag
cacgcacaggatacgctgaacatggctcggagcagcgcctcacaagctctagaagcccta
ggggactgcaccgagcaccttgaggcttcactgtaccggatagacacggcgcaggatctt
caacgggttctcaatcaagctccaagcgtgatggcgcagcttcgggtataccagcacgat
gaacaagctttagaagagacaaaagcagcccttacagcgctcaagcgggactccgagaaa
gcgcaacggacggtggatggaattgcgaaacgcgagctccagagccagcaaaaactcagt
gatattagcaagcggctaagctccctgcacgatgttgaacagaactacgctcgggcccaa
cttgccctagaaactgcgaaaaagacccagcaagaagtcgctgcccaagcagaaaaatta
gagcaggcgcaagctgctcacgaccaggccgtgcaggcgtatgagctaattcagcgggta
tctatcaccgcatcggaagagtacacgaggcttcaaaaacggcgcttagaacaggtcgcc
ttcacacttgcagaggagctggacgaaggacagccctgcatggtgtgcggctctcgggag
catccgcaaccggcccagcccagcgtcaacggcattaccttagtggaacaatctgagatt
gatgccgccgaggaacgtgcccaccgggagcagcagaaagcatcggtagcagctacttcc
gtggcgcaaacccaggccgttatggatcagctcaaggagtttcacatacctgattctcaa
gaagcacagcgtcaggtgacagaagtacaaaatatctataaccaggctcaagaagcctta
aaacacaagcgtgaagcgcagcatcaacaggaaaaagagacgcttgaacttcagaaaatt
tcggaagagcagacccaggcgcgtacatctttaacccaactgcagactcagcaggcgagt
gagcagcaaaccctgaaaaagcttgagaaaaaactttgtcaggtggtggctaccataagt
tttgccgaccgggtacgcatgcttgaaagctacgtggagcaggcgcatcgtgctgttgat
gcaagccgtcgtcttgacgatgccacaattagcgcagcagagagcgcacatcaggcacag
caaagtctggaacggtcggttttcgagactttcgaggcggttcagcaggcggttctcaca
gaggtacagcaacagcatcttgagcaggctatttcggcttatcgagaagaacatgccact
cttcaagcctctcttgaccgaccagccatgcgtaccgttgccacgcttattgagcatgga
cagaaggctccttcccaagaagaacttacccgcatacgtcaagaacgcgataatgttgag
caacagtatgaaactttgatgacacgcgagggtattcgtacaaatggtattgaaacttta
gaatctctgcttcaggactaccaagaacagcaaggggaatcagcccatgccgtggaacag
gccaatctttacgccgggctagcgagcatcgctcggggtgacaatcctgataaaaaccat
cagatagatcttgtgagctatgtgctcggcggtgaatttgagcaagtcttgcaagtggct
tctgagcatctgcagcgtatgagcgataatcgttaccgtttggtactcagcgacaaacga
gagaaacgagcgcgtattggcggcggtctgagtattagcgttgaggataactggaataac
gaccagcgtgaggtgaattctctttccggcggcgagtctttcctcgcatcgctttcatta
gccttgggtcttgccgaagttgttcaagcacgtaacggcggtatagagattgaaacactt
ttcattgatgaaggttttggaactctcgatgcgcagactctggagcttgtaatggaaaca
ctggagaatattcgagagaacggtcgtgttattggacttatatcacacgttgaagatatg
aaagagcgtatttctgcccaagtcagtatagaaaagcgacaaaatggctcgactcttcga
gttaacgtttag
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