Roseateles depolymerans: RD2015_1101
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Entry
RD2015_1101 CDS
T04166
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rdp
Roseateles depolymerans
Pathway
rdp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RD2015_1101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rdp03400
]
RD2015_1101
Enzymes [BR:
rdp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
RD2015_1101
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
RD2015_1101
DNA repair and recombination proteins [BR:
rdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
RD2015_1101
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF2835
Auto_anti-p27
C1_2
Motif
Other DBs
NCBI-ProteinID:
ALV05594
UniProt:
A0A0U3MMQ1
LinkDB
All DBs
Position
1238757..1239623
Genome browser
AA seq
288 aa
AA seq
DB search
MPELPEVEVTRLSFASAIEGSRVLDVRMGKPLRWPLGVEAGRLVGRRVGAVLRRGKYLWL
PLRTDGDAIDLQDPAQPLPPGGGLLLHLGMSGSLAFREQPPVSGPHDHFELITDRGVLRL
TDPRRFGAVVWSEGLDVAPAAKLLAGMGLEPFDEAFDGAHLHRGFKGRRVAIKQAILAGD
VVVGAGNIYACEALFMAGIDPRLPAGKISRPRAQKLAQALTQVLGEALEAGGSTLRDFKD
AHGVAGSFQMQARVYGREKEPCRVCGTPIRRIVQGQRSTFFCPNCQKR
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttgccagaagttgaagttacacgtctgagctttgcctccgccattgaaggg
tctcgtgtgctggacgtgcgcatgggcaagcccctgcgttggccgctgggcgtggaggcc
gggcggctggtgggccgacgggtgggggccgtgctgcggcggggcaaatacctgtggctg
ccgctgcgcaccgacggggacgccatcgatctccaggaccccgcccagccgctgccgcca
ggcggtgggctgttgctgcacctgggcatgtccgggtcgctggcctttcgggaacaacca
ccggtctccggcccccacgaccatttcgagctgatcaccgaccgcggggtgctgcgcctg
accgacccgcgccgatttggtgcggtcgtgtggtccgagggactggatgtggcgccggcc
gccaagctgctggccggcatgggcctggagccgttcgacgaagccttcgacggcgcgcac
ctgcaccgcggcttcaagggtcggcgggtggccatcaagcaggccatcctggccggcgac
gtggtggtgggggcgggcaacatctatgcgtgcgaggcgctgttcatggcgggcatcgat
ccgcgactgcccgcgggcaagatcagccggccccgggcgcagaagctggcgcaggcgctg
acccaggtgctgggcgaagcgctggaggctggcggcagcacgctgcgggacttcaaggat
gcgcacggggtggcgggcagtttccagatgcaggcgcgggtgtacggccgagagaaggaa
ccgtgccgcgtgtgcggcacgccgatccggcgcatcgtgcaggggcagcgatcgacgttc
ttctgcccaaactgccagaagcgctga
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