KEGG   Roseateles depolymerans: RD2015_1494
Entry
RD2015_1494       CDS       T04166                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
rdp  Roseateles depolymerans
Pathway
rdp02024  Quorum sensing
rdp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rdp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RD2015_1494
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    RD2015_1494
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rdp03019]
    RD2015_1494
   03036 Chromosome and associated proteins [BR:rdp03036]
    RD2015_1494
Messenger RNA biogenesis [BR:rdp03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     RD2015_1494
Chromosome and associated proteins [BR:rdp03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    RD2015_1494
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: ALV05979
UniProt: A0A0U3N172
LinkDB
Position
1759211..1759453
AA seq 80 aa
MSNKGQLLQDPFLNLLRKEHVPVSIYLVNGIKLQGHIESFDQYVVLLRNTVTQMVYKHAI
STVVPGRAVNFHAGDGGEAN
NT seq 243 nt   +upstreamnt  +downstreamnt
gtgagcaacaaaggacaactcttgcaagaccccttcctgaacctgctgcgcaaggagcat
gtgccggtgtccatctatctggtcaacggcatcaagctgcaaggccacattgagtccttt
gaccaatacgtggtgctgctgcgcaatacggtcacgcagatggtctacaagcatgccatc
tccacggtcgtgcccggccgcgccgtcaacttccacgctggcgacggcggcgaagccaac
tga

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