Roseateles depolymerans: RD2015_1494
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Entry
RD2015_1494 CDS
T04166
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
rdp
Roseateles depolymerans
Pathway
rdp02024
Quorum sensing
rdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RD2015_1494
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RD2015_1494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rdp03019
]
RD2015_1494
03036 Chromosome and associated proteins [BR:
rdp03036
]
RD2015_1494
Messenger RNA biogenesis [BR:
rdp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
RD2015_1494
Chromosome and associated proteins [BR:
rdp03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
RD2015_1494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
ALV05979
UniProt:
A0A0U3N172
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All DBs
Position
1759211..1759453
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AA seq
80 aa
AA seq
DB search
MSNKGQLLQDPFLNLLRKEHVPVSIYLVNGIKLQGHIESFDQYVVLLRNTVTQMVYKHAI
STVVPGRAVNFHAGDGGEAN
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaaaggacaactcttgcaagaccccttcctgaacctgctgcgcaaggagcat
gtgccggtgtccatctatctggtcaacggcatcaagctgcaaggccacattgagtccttt
gaccaatacgtggtgctgctgcgcaatacggtcacgcagatggtctacaagcatgccatc
tccacggtcgtgcccggccgcgccgtcaacttccacgctggcgacggcggcgaagccaac
tga
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