Roseateles depolymerans: RD2015_1673
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Entry
RD2015_1673 CDS
T04166
Name
(GenBank) DNA-directed DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
rdp
Roseateles depolymerans
Pathway
rdp03030
DNA replication
rdp03410
Base excision repair
rdp03420
Nucleotide excision repair
rdp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RD2015_1673
03410 Base excision repair
RD2015_1673
03420 Nucleotide excision repair
RD2015_1673
03440 Homologous recombination
RD2015_1673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rdp03032
]
RD2015_1673
03400 DNA repair and recombination proteins [BR:
rdp03400
]
RD2015_1673
Enzymes [BR:
rdp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RD2015_1673
DNA replication proteins [BR:
rdp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RD2015_1673
DNA repair and recombination proteins [BR:
rdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
RD2015_1673
NER (nucleotide excision repair)
GGR (global genome repair) factors
RD2015_1673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ALV06157
UniProt:
A0A0U3MBU5
LinkDB
All DBs
Position
1958835..1961636
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AA seq
933 aa
AA seq
DB search
MNKPLMLLVDGSSYLYRAYHAMPDLRGPDGRPTGAIHGMVAMLKRLRDDAGAEHAACVFD
ASGPTFRDEWYPEYKAQRSPMPDALREQIEPIHEVVRLLGWPVLTVPGIEADDAIGTLSR
VAAQAGHQVLISTGDKDLAQLVTPDVQLINTMSNERLDEAGVLAKFGVPPDRIIDYLTLM
GDTVDNVPGVEKVGPKTAAKWIAEHGSLDGVIAAADKIKGVAGDNLRKALDWLPMGRKLV
TVKLDCDLCEHVPGWPALEALAFKPVDEAGLLEFYNRNGFKTWRRELETRLGGSSPSHGA
TVAPNLQAGQTTGPTTGQSDLFADPPVAPTPAEKHYETITDWPRLDDWLSRLQQAPLAAL
DTETDSLDAMQARIVGISFSVKPGEAAYVPLRHEGPDAPVQLPLDEVLARLKPWLEDATR
PKVGQNIKYDTHVLANHGIQVAGYVFDTMLESYVLEAHRSHSLEALADRVLGRKGLSYED
LCGKGAHQIPFAQVEVAKAAEYSCEDSDMCLQVHLALMPRLEAEAKLKFVYEQLEMPVSQ
LLARIERTGVLIDAARLQAQSAELGQRMVAAEQAAHEMAGQPFNMGSPKQIGEILFNRLG
LPVVKRTATGAPSTDEEVLEKLSADFPLPAKILEYRALSKLKSTYTDKLPLMVNPQTGRV
HTTYAQAVAVTGRLSSNEPNLQNIPIRTAEGRRVREAFIAPPGHRIVSADYSQIELRIMA
HISEDPGLLRAFQEGQDVHRATAAEVFGGDVGSVTPEQRRYAKTINFGLIYGMGAFGLAQ
SLGIEQKAAKDYIDRYFTRFAGVRTYMDDTKQFAKAKGYVETVFGRRLWLPEINSGNGPR
RSGAERQAINAPMQGTAADLIKLAMIAVQQALDEQNKRTRIVMQVHDELVFEVPEDELDW
VRAEVPTLMAGVAALKVPLLAEVGVGSNWDEAH
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaataagcctttgatgttgctggtggacggctccagctatctgtatcgcgcctatcac
gcgatgcctgacctccgcggccctgacggccgccccactggcgccattcatggcatggtg
gccatgctcaagcgactccgcgatgatgccggcgctgagcatgcagcctgtgtcttcgac
gcttccggccccaccttccgcgacgagtggtaccccgagtacaaggcccagcgttccccc
atgcccgacgcgctgcgcgaacagatcgagcccatccacgaggtggtgcgcctgctcggc
tggcccgtcctcaccgtccctggcatcgaggcggatgacgccatcggcaccctgtcccgc
gtcgcggcccaggccggccaccaggtcctgatctccaccggcgacaaggacctggcccaa
ctcgtcacccccgacgtccagctgatcaacaccatgtccaacgaacgcctggacgaagcc
ggcgtgctggccaagttcggcgtcccacccgacagaatcatcgactacctcaccctcatg
ggcgacaccgtggacaacgtccccggcgtcgaaaaggtcggccccaagaccgctgccaag
tggatcgccgaacacggatcgctcgacggcgtcatcgccgccgccgacaagatcaagggc
gtggccggcgacaacctgcgcaaggcgctcgactggctgcccatgggccgcaagctggtc
accgtcaaactcgactgcgacctctgcgagcatgtccccggctggcccgccctcgaagcc
ctggccttcaagccggtcgacgaggccggcctgctggagttctacaaccgcaacggcttc
aaaacctggcgtcgcgaactcgaaacccgcctgggcggcagctcccccagccacggcgcc
accgtcgcccccaacctgcaagccggccagaccacgggcccaaccactggccagagcgac
ctcttcgccgaccctcccgtcgcccccaccccggccgaaaagcactacgagaccatcacc
gactggccccgcctggacgactggctctcccgcctgcaacaagccccgctggccgccctc
gacaccgaaaccgactccctcgacgcgatgcaggcccgcatcgtcggcatcagcttcagc
gtcaagcccggcgaagccgcctacgtcccgctgcgccatgaaggcccggacgccccggtg
caactgcccctggacgaggtcctcgcacgcctgaaaccctggctggaggacgcgacccgt
cccaaggtcggccagaacatcaaatacgacactcacgtcctggccaaccacggcatccag
gtcgccggctacgtcttcgacaccatgctggagagctacgtgctcgaagcccaccgcagc
cacagcctggaagcgctcgccgaccgcgtcctcggccgcaagggcctgagctacgaagac
ctctgcggcaagggagcccaccagattccgttcgcccaggtcgaagtggccaaggccgcg
gaatactcctgcgaagactccgacatgtgcctgcaggtgcacctggcgctcatgccgcgc
ctggaagccgaggccaagctcaagtttgtttacgaacagctggagatgccggtgtcccag
ctgctggcgcgcatcgagcgcaccggcgtgctcatcgatgccgcccgcctgcaggcccag
agcgccgagctcggccagcgcatggtcgctgccgaacaggccgcccatgagatggccggc
cagcccttcaacatgggctcgcccaagcagatcggcgaaatcctcttcaaccgcctgggc
ctgcccgtcgtcaagcgcaccgccaccggcgcgccgtccaccgatgaggaagtgctcgag
aagctgtccgccgacttcccgctgccggccaagatcctcgaataccgggccctgtccaaa
ctcaagagcacgtacaccgacaagctcccgctgatggtcaacccccagaccggccgggtg
cacaccacctatgcccaggccgtggcggtgaccggacggctgtccagcaacgagcccaac
ctgcagaacatccccatccgcacggccgagggccgccgggtgcgcgaggccttcatcgcc
ccgccgggtcaccgcatcgtgagtgccgactattcgcagatcgagctgcgcatcatggcc
cacatcagcgaagaccccggcctgctgcgcgccttccaggaaggccaggacgtgcaccgc
gccaccgcggccgaagtgttcggtggcgacgtgggcagtgtcacgccggagcagcgtcgc
tatgccaagaccatcaacttcgggctgatctacggcatgggcgcctttggcctggcccag
tcgctgggcatcgagcagaaggcagccaaggactacatcgaccgctacttcacccgcttc
gccggtgtgcgcacctacatggacgacaccaagcagtttgccaaggccaaaggctatgtc
gaaaccgtctttggccgccgcctctggttgcccgagatcaactccggcaacggaccgcgc
cgcagcggggccgagcgtcaggccatcaacgcgccgatgcagggcacggcggccgacctg
atcaagctggcgatgatcgccgtccagcaggccctggacgaacagaacaaacgcacccgc
atcgtcatgcaggtgcacgacgaactcgtcttcgaagtcccggaggacgagctggactgg
gtccgcgccgaagtgccgacgctgatggccggggtcgctgcgctgaaggtgccgctgctg
gcggaagtcggcgtcggcagcaactgggatgaagcgcactga
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