Roseateles depolymerans: RD2015_1846
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Entry
RD2015_1846 CDS
T04166
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rdp
Roseateles depolymerans
Pathway
rdp03030
DNA replication
rdp03430
Mismatch repair
rdp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RD2015_1846
03430 Mismatch repair
RD2015_1846
03440 Homologous recombination
RD2015_1846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rdp03032
]
RD2015_1846
03400 DNA repair and recombination proteins [BR:
rdp03400
]
RD2015_1846
Enzymes [BR:
rdp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RD2015_1846
DNA replication proteins [BR:
rdp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RD2015_1846
DNA repair and recombination proteins [BR:
rdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RD2015_1846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ALV06325
UniProt:
A0A0U3DZL3
LinkDB
All DBs
Position
2173420..2176974
Genome browser
AA seq
1184 aa
AA seq
DB search
MAFVHLRIHTEFSVVDGTLRVDDAAKAAAKDGQVALGLTDLANMFGGVKFYNACRKKGVK
PILGAEVWLEADSLDKPPSRVLLLVQNYQGYLNLSELLSRAWIQNVQRNQALLKLEWMQE
LNEGLICLGGMQFGPIGQALIAGDANRALDWARRLAAIYPNRFYVELQRAGLPGQEALVR
QLVPLAAQAGLPVVATHPIQFLEEDDFEAHEARVCVAEGETLSNPKRIKRFLPSQHFKKQ
AEMEALFADIPSAITNTVEIARRCSLTLVLGKPQLPNFPTPIRADGTPMPMEQYFRQLSY
EGLEDRLNLLYPDPAKREEVRPRYVERLEFELNTIIKMGFPGYFLIVGDFIRWAKNNGCP
VGPGRGSGAGSLVAYVLLITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQGNRDRVIEY
VKDKYGRPAVSQIATFGTMAAKGALRDIGRVLGMGFGHVDSIAKLVPAPPGKTVTLAKLP
PDFDPDKAKMVYARHESPEIEEREKQDEEVAGLLEMAARVEGTVRSIGMHAGGVLIAPGK
ITDFCPQYQQPGSTSAVSQYDKDDVEAIGLVKFDFLGLATLTILELAKNFIVAQYPEHKD
FAFETIPLDDKKTYKLFSDGLTESVFQFESSGMQRMLKDAKPSRLEDLIALNALYRPGPM
DLIPSFVARKHGKEVVEYPHPLVEPVLSETYGIMVYQEQVMQTAQVLGGYSLGGADMLRR
AMGKKKAEEMAMHRELFRKGAAGKGIDQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYH
TGWLKVHFTAEFFAANMTIESDDTDKLKVLMKDAKLFGIDFEPPNINLGVGRFEPMPPAP
GSEAGADKRGGTPRSRKINYSLGAIKGTGAGAIEAIVRARTEGGPFKSFFDFCARVDRKA
VNKRVVEALIKAGAFDALEPDRARLLASVALGYTYADNLAQNVNQGGLFDFDDTHGSSTA
EPELVDVPSWGIKERLSLEKTAIGFYLSGHLFDQCETEIRKMVRRRIVDLQDSREPVVVA
GIVSDMRVINGQRGRVGIFKLDDKTDAIEAVANEEMLNANKELLTEDELVIAVGKVQNDR
FSGGLRMNIQQVYSLPAARAKFGRFLRTAPNLPASTVMELIRTWPAKRVETDQGVLSQGL
ELRIPIRRDGAVAELGLGGAGKFWPCDEALKKLAPAEIVYDAGG
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgttcacctccgcattcataccgagttttccgtggtcgacggcaccctgcgc
gtcgacgatgccgccaaggctgccgccaaggacggccaggtggccctgggcctgaccgac
ctggccaacatgttcggcggggtgaagttctacaacgcctgccgcaagaagggcgtcaag
ccgatcctcggcgccgaggtctggctggaggcggacagcctggacaaaccgcccagccgc
gtgctgctgttggtgcagaactaccagggctacctgaacctgagcgagctgctgtcgcgg
gcctggatccagaacgtgcagcgcaaccaggcgctgctgaagctggaatggatgcaggag
ctcaacgagggtctgatctgcctgggcggcatgcagttcggcccgatcgggcaggcgctc
atcgcgggcgacgccaaccgcgctctggactgggcccggcgcctggcggccatctatccc
aaccgcttctatgtcgagctgcagcgcgccggcctgccgggccaggaggcgctggtgcgc
cagttggtgccgctggccgcccaggccggtttgccggtcgtcgccacccatcccatccag
ttcctggaagaggacgatttcgaggcccacgaggcgcgggtctgcgtggccgagggcgag
acgctgtccaaccccaagcgcatcaagcgtttcctgcccagccagcatttcaagaagcag
gccgagatggaggcgctgttcgccgacatccccagcgccatcaccaacacggtggaaatc
gcccggcgctgcagcctgactttggtgctgggcaagccgcaactgcccaacttccccacc
cccatccgcgccgacggcacgcccatgccgatggagcagtacttccgccagctctcgtat
gaaggactggaagaccgcctgaacctgctctacccggaccccgccaaacgcgaggaagtg
cgcccgcgctatgtggagcggctggagttcgagctcaacaccatcatcaagatgggcttc
cccggctacttcctcatcgtgggggacttcatccgctgggcgaagaacaacggctgcccg
gtgggcccgggacggggctccggcgccggctcgctggtggcctatgtgctgctgatcacc
gacctggacccgctgcagtacaacctgctgttcgaacgtttcctgaaccccgagcgggtc
tcgatgcctgacttcgacatcgacttctgccagggcaaccgggaccgggtgatcgaatat
gtgaaggacaagtacggccgccccgccgtgagccagattgccaccttcggcaccatggcc
gccaagggcgcgctgcgagacatcggccgggtgctgggcatgggcttcggccatgtggac
tccatcgccaagctggtgcccgcgccgccgggcaagacggtgacgctggcgaagctgccg
cccgacttcgaccccgacaaggccaagatggtctatgcgcggcacgagtcccccgagatc
gaggaacgcgagaagcaggacgaggaagtggccggcctgctggagatggctgcgcgggtg
gagggcacggtgcgatccatcggcatgcatgcgggcggcgtgctgatcgcccccggcaag
atcaccgacttctgcccgcagtaccagcagccggggtccacctcggcggtgagccagtac
gacaaggacgacgtcgaggccattggcctggtgaagttcgactttctggggctggccacg
ctgaccatcctggagctggccaagaacttcatcgtggcgcagtacccggagcacaaggac
ttcgccttcgagaccattccgctggacgacaagaagacctacaagctcttctccgacggc
ctgaccgagtcggtgttccagtttgaatccagcggcatgcagcgcatgctcaaggacgcc
aagccgtcccgcctggaagacctgatcgccttgaacgcgctgtaccgcccgggtccgatg
gacctgatccccagcttcgtggcccgcaagcacggcaaggaagtggtggagtatccgcat
ccgctggtcgagcccgtgctgtccgagacctacggcatcatggtctaccaggaacaggtg
atgcagaccgcgcaggtgctgggcggctactcgctgggcggcgcggacatgctgcgccgg
gccatgggcaagaagaaggccgaggaaatggccatgcaccgcgagctgttccgcaagggc
gccgcgggcaagggcatcgaccaggacaaggccgacgaggtcttcgacctgatggagaag
ttcgcgggctacggcttcaacaagtcgcatgcagccgcctactcgctgctggcctatcac
accggctggctgaaggtgcatttcacggcggagttcttcgccgcgaacatgaccatcgaa
tcggacgacaccgacaagctcaaggtcctgatgaaggacgccaagctgtttggcatcgac
ttcgagccgcccaacatcaacctgggcgtcggccgcttcgagccgatgccgcccgccccg
ggcagcgaggccggcgccgacaagcgcggcggcacgccgaggtcccgcaagatcaactac
agcctgggcgccatcaagggcaccggtgccggcgcgatcgaggccatcgtgcgcgcacgg
accgaaggcgggccgttcaagagcttcttcgatttctgcgcccgggtggaccgcaaggcg
gtgaacaagcgggtggtggaagcgctgatcaaggccggcgccttcgatgcgctggagccc
gaccgcgcccgcctgctggccagcgtcgcgctgggctacacctatgcggacaacctggcc
cagaacgtcaaccagggcggcctgttcgacttcgacgacacccatggcagctccaccgcc
gagccggaactggtggacgtgcccagctggggcatcaaggagcggctgagcctggagaag
acggccattggtttctacctctccggccacctgttcgaccagtgcgagaccgagatccgc
aagatggtgcggcggcgcatcgtcgacctgcaggacagccgcgagccggtggtggtggcc
ggcatcgtcagcgacatgcgcgtcatcaacgggcagcgcggccgggtgggcatcttcaag
ctggacgacaagaccgatgccatcgaggcggtcgccaatgaagagatgctcaatgccaac
aaggaactgctgaccgaggacgagctggtcatcgcggtgggcaaggtgcagaacgaccgc
ttctccggcggcctgcgcatgaacatccagcaggtctacagccttccggcggctcgggcc
aagttcggccgcttcctgcgcacagcgcccaacctgccggcctcaacggtgatggagctg
atccgcacctggccggccaagcgggtggagaccgaccagggcgtgctgagccagggcctg
gagctgcggatccccatccgccgggatggcgcggtcgccgagctgggactgggcggcgcc
ggcaagttctggccctgcgacgaggcgctgaagaagctggcgcctgcggaaatcgtctac
gacgcgggcggctga
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