Roseateles depolymerans: RD2015_2047
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Entry
RD2015_2047 CDS
T04166
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rdp
Roseateles depolymerans
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rdp03032
]
RD2015_2047
03400 DNA repair and recombination proteins [BR:
rdp03400
]
RD2015_2047
Enzymes [BR:
rdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RD2015_2047
DNA replication proteins [BR:
rdp03032
]
Prokaryotic type
DNA Topoisomerases
RD2015_2047
DNA repair and recombination proteins [BR:
rdp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RD2015_2047
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
ALV06523
UniProt:
A0A0U3N2T1
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All DBs
Position
2399445..2400656
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AA seq
403 aa
AA seq
DB search
MPLCWVSDVEPGLRRLRTAKGFRYVDANGRAVRDAAVIRRIQKLAIPPAYEDVWICPRED
GHLQATGRDARGRKQYRYHPDWMQERGENKFGLLSDFALRLPRLRRQVQRRLRAGGLDRE
RVVAALVRLLDRTWMRIGGREYARQNGSYGLSTLLCRHVKVSGDALMLSFVGKSGVRHQL
AVKDEQVAALVRRCRDLPGKELFGYEDEQGQPHRIDASDVNEWLARLGGEVCSAKVFRTW
HASVLALDLLCGHARAGTAPGVALKDTLVQVSTRLGNTVAVCRKSYVHPGVLALAQADTL
PTLLDQRWVRQPPSAAGLSLAERRLLGLLRAAAKDQAKAQAAAEEPLARTLKRSLRRSAE
VGATRPAGKTTTRRATAPSTPSPAVSAPVKTARKKTSAAAATA
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgcccctgtgctgggtctccgatgttgaaccgggtctgcgccgcctgcgcacggccaag
ggtttccggtatgtcgacgccaacggccgcgcggtgcgggacgccgccgtcatccgccgc
atccagaagctggcgattcccccggcctatgaggacgtgtggatctgcccgcgcgaggac
ggtcacctgcaggccaccgggcgcgacgcgcgcggccgcaagcagtaccgctatcacccc
gactggatgcaggagcggggcgagaacaagttcggcctgctgagcgacttcgccctgcgc
ctgccgcgcctgcgacgacaggtgcagcggcgcctgcgggccggcggcctggaccgcgaa
cgcgtggtggccgcactggtgcggctgctcgaccgcacctggatgcgcatcggcggccgc
gaatatgcccgccagaatggctcctacggcttgagcacgctgctgtgccgtcatgtgaag
gtcagcggggatgccttgatgctcagcttcgtcggcaagagcggcgtgcggcatcagctg
gcggtgaaggacgaacaggtggcggcgctggtgcgtcgctgccgggacctgcccggcaag
gagctgttcggctacgaggacgagcaggggcagccccatcgcatcgatgcgtccgacgtc
aatgaatggctggcccggctgggcggcgaagtgtgcagtgcgaaggtgttccgcacctgg
catgcgagcgtgctcgcgctggacctgctgtgtggccatgcccgcgcgggtacggcgcct
ggcgtggctttgaaggacacgctggtgcaggtgtccacccggctgggcaatacggtggcg
gtgtgccggaagtcctatgtgcatccgggcgtgctggcgctggcgcaggcggacacgctg
cccacgctgctggaccagcgctgggtgcgccaaccgccgtccgcggcgggcctgagcctg
gcggagcggcgcctgttggggctgttgcgggcggcggccaaggaccaagccaaggcgcag
gccgcggccgaggagccgctggcccgcacgctcaagcggtcgctgcggcgctctgcggag
gtaggggcgacgcggcccgcagggaagacgacgacgcggagggcgactgcgccgtcgacg
ccatcaccggcagtgagcgcaccggtgaagaccgcacgaaagaagacaagcgctgcagcc
gcgacagcgtag
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