Roseateles depolymerans: RD2015_2059
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Entry
RD2015_2059 CDS
T04166
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
rdp
Roseateles depolymerans
Pathway
rdp02020
Two-component system
rdp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RD2015_2059
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RD2015_2059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rdp03021
]
RD2015_2059
Transcription machinery [BR:
rdp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RD2015_2059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
LacI
HTH_23
HTH_3
Motif
Other DBs
NCBI-ProteinID:
ALV06535
UniProt:
A0A0U3LNN2
LinkDB
All DBs
Position
2410467..2411879
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AA seq
470 aa
AA seq
DB search
MGALELRHEHRQSQTLSPRLQHAVRLLQMSSLDFSTMVTDMLGRNPFLEVTEGSEEGAAL
EGDMPVAESPVMSDVPESLPDDREIWRADSGSSLRRADDGEMSALEMTAAQTCLREHLRS
QLNVLRLSPRDLLLASIVAESVDDDGYLRSSLEELAAVSQLNPAPELGEMQIALKRVQAL
DPLGVGARSVAECLLLQLPKIDCGRSRQLAERILTQHLNLLASRDIPSLAQLLDITVAEA
EAVCLKLRRFDPRPGWRYETTQAPYIVPDVLTTKVRGQWRVQLNPAVIPKVRMNQVYAEL
FQRHRNQGHSELANHLQEARWTMRNIEQRFSTILDVANAIVRRQRHFLEFGAMAMKPLGL
KEIADEVGIHESTVSRVTNNKYLATPTGVYELKYFFSRAIVSSNGSACSGTAIRGLIKDI
IEAEKPDSPLSDAEITRQLARQGLVVARRTVTKYRQMLRIEAVDRRRQHS
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
gtgggagccttggaactacggcacgagcacaggcagtctcagacgctgtccccacgtctg
caacatgccgtcaggttgctgcagatgtcctcgctggacttttcgacgatggtcacggac
atgctggggcgcaaccccttcctggaagtgacggaaggatcggaggaaggtgcggcgctt
gaaggcgacatgccggtggcggaatcgccggtgatgtccgatgtaccggaatcgctgccg
gacgatcgcgagatctggcgcgctgacagcggcagctcgctgcgccgcgcggacgacggt
gaaatgagcgcgctggagatgaccgccgcgcagacctgcctgcgtgagcatctgcgcagc
cagctcaatgtgctgcggctgtcaccgcgggatttgctgctggcgtccatcgtggccgag
tcggtggatgacgacggctatctgcgcagctcgctggaagagctggccgccgtgtcgcag
ctcaatccggcgcccgagctgggggaaatgcagattgcgctcaagcgcgtgcaggccctg
gacccgctgggcgtgggcgctcgcagcgtggcggaatgcctgctgctgcagctgcccaag
atcgactgcggccgcagccgccagttggccgagcgcatcctcacgcagcatctgaacctg
ctggcctcgcgggacatcccgtcgctggcgcagttgctggacatcaccgtggcggaagcc
gaggcggtgtgcctgaagctgcggcgttttgatccgcgaccgggctggcggtatgagacc
acgcaggccccctacatcgtgccggacgtgctgaccaccaaggtgcgcggccagtggcgc
gtgcagctcaaccctgccgtgattccgaaggtgcgcatgaaccaggtgtatgcggagctg
ttccagcgccaccgcaaccaggggcattcggagctggccaatcacctgcaggaggcccgc
tggacgatgcgcaatatcgagcagcgcttctccaccatcctggacgtggccaacgccatc
gtgcgtcgccagcgtcatttcctggaattcggcgcgatggcgatgaagccgctgggcctg
aaggagatcgcggacgaggtgggcatccacgaatcgaccgtctcccgcgtgaccaacaac
aagtacctggccacgcccaccggcgtgtatgagctgaagtacttcttctcgcgcgccatc
gtcagcagcaacggcagcgcttgctcgggcactgccatccgcgggctgatcaaggacatc
atcgaggcggagaagccggacagcccgctgtccgatgccgagatcacgcgtcagttggcc
cgccaggggctggtggtggcgcgtcgcacggtgaccaagtaccgccagatgctgcgcatc
gaagcggtggatcgccgtcgtcagcacagctga
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