Roseateles depolymerans: RD2015_2125
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Entry
RD2015_2125 CDS
T04166
Name
(GenBank) RNA polymerase sigma factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
rdp
Roseateles depolymerans
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rdp03021
]
RD2015_2125
Transcription machinery [BR:
rdp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RD2015_2125
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r1_2
Sigma70_r4
Sigma70_r3
COOH-NH2_lig
Motif
Other DBs
NCBI-ProteinID:
ALV06599
UniProt:
A0A0U3LNU4
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All DBs
Position
2486990..2488384
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AA seq
464 aa
AA seq
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MSQRAASRDGHDLPNRSPGQEAGRYGLPPSLAARPPAVMEGALAKDVPHIHDMSPPEEAV
ADSPTDEEPDQADGFDGSDGSVDSVHYADSADPADAAGVTEAADFDPDDVAVELLEVGDD
AAVDLPVVVDDADLLLVAEAEMEVAVGVSGAEAGDGGEADAPDAPEEGRASQPLLAPMEG
GDLGNALQAYLRDIRRTPLLTPQQEFETATRARAGDFEARQAMIEHNLRLVVSIAKNYLG
RGLPMSDLIEEGNLGLMHAIGKFEPERGFRFSTYASWWIRQAVERALMHQARLVRLPVHI
VRELNQVLKARRSLEALSAGQGGESQVRDEDVARALGRPVEEIAALLAYAELPSSLDSPV
DRNGEGSESMLDLVADEQAMDPAGLRLTHELEGLLKAGLASLSEREREVLAGRYGLADRE
PETLDVLAVRLGLTRERIRQIQIEAQAKLKRNMLRQGINRDSIF
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaacgcgccgcctcacgggatgggcatgacttgcccaaccggtctccaggccag
gaagctggccgttatggattgccgccttcgctggcggcccgcccgcccgccgtgatggaa
ggggcgctggcgaaggatgtccctcacatccacgacatgtcgccgcccgaagaggcggtg
gcagactcgccgacggacgaagagcccgaccaagccgatggattcgacggatctgacggg
tcggtggattccgtgcattacgcagattcggccgatcccgccgatgctgccggcgtcacc
gaggcagctgacttcgacccggacgatgtcgccgtggaattgctcgaggtgggtgatgac
gccgcggtcgatctgccagtggtggtcgatgacgctgacctgctgctcgtggcggaagcc
gaaatggaagtggcggtgggtgtctctggcgcggaagctggggacggtggggaggctgat
gcgcctgacgccccggaagaaggccgggccagccagccgctgctcgcgcccatggaaggg
ggcgatctcggcaatgccttgcaggcctatctgcgcgacatccgccgcacgccgctgctg
accccgcaacaggaattcgagacggccacccgggcacgcgccggcgacttcgaagcccgc
caggccatgatcgagcacaacctgcgcctggtggtgagcatcgccaagaactacctgggc
cgcggcctgccgatgagcgacttgatcgaggagggcaacctcggcttgatgcatgccatc
ggcaagttcgagcccgaacgcggctttcgtttctcgacctacgccagctggtggatccga
caggcggtggagcgggcgctgatgcatcaggcgcggctggtgcggctgccggtgcacatc
gtgcgggagctgaatcaggtgctgaaggcacggcgctcgctggaggcgttgtctgcgggg
cagggcggtgagtcgcaggtgcgggacgaggatgtggcccgcgcactgggccggccggtg
gaggaaatcgccgccttgctcgcctatgcggagttgccgagttccctggactcgccggtg
gatcgcaacggggagggcagcgaatcgatgctggatctcgtggccgatgaacaggcgatg
gatccggcggggctgcgtctcacgcatgagctggaggggctgctcaaggcggggctggcc
tcgctcagcgagcgcgagcgggaggtgctggccgggcgttatgggctggccgaccgtgag
ccggaaaccctggacgtgctggctgtgcggctggggctgacgcgggagcgcatccggcag
atccagatcgaggcgcaggccaagctcaagcgcaacatgctgcggcagggcatcaaccgc
gattccatcttctga
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