Roseateles depolymerans: RD2015_2565
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Entry
RD2015_2565 CDS
T04166
Name
(GenBank) Pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rdp
Roseateles depolymerans
Pathway
rdp00040
Pentose and glucuronate interconversions
rdp01100
Metabolic pathways
rdp02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
RD2015_2565
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RD2015_2565
Enzymes [BR:
rdp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
RD2015_2565
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pectinesterase
FAF
Motif
Other DBs
NCBI-ProteinID:
ALV07030
UniProt:
A0A0U3D0C6
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Position
complement(3008635..3010926)
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AA seq
763 aa
AA seq
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MAADGSGTHRSVQAALEALPAAGGDGRRINILIRPGVYREAVCVQGKAPFRLYGLGDAKD
VVIVASRYAGLERPMPASATKAERQEVSEQVRRVALPDGCQVPLGTAAPLGPGAAATGAA
TGAATIVSTSPPTYGTPGSASVTLLTDDVQLQRLTIANDAMDAVRAGEGYPPGAGEKGGA
QAVALFTRGDRLQLEEVRLLGHQDTFEAERATGRPGRVLVRRSEIRGDVDFIFGGATLVI
DDSLIVSRAGRRQAGNGGHVIAPSTPQDEPYGFLIQRSRWLAEPGVPPVSISLGRAWDRG
VTPGTWQPGPAVPNGQAVLRDNLLGPHLTGWAASTARRPFSTDGQGANRMAEHRNQALPL
AAFERLPDGDGWASIDDGTRGGAQAGLDAIRWVRTRSELDAAVALGDVPKIIAVAGRIDL
AADAAGRPLGIDAFRDPAFDLESFAKAYDPATWGRRAPEGPLEDARRRSARKQAAQVMVR
IPSNTTVIGITPDAGFDGGSLMLERVRQVILRNLRFSDAYDYFPAWDPQDNGHGEWNSEY
DTVSLREADQVWVDHCSFDDGQRPDRSEPIVLGRPLQRHDGLLDITRQSDRVTVSWNLFR
QHDKTMLIGGSDNHREDRGRLRVTLHHNLWEAVKERTPRVRYGQVHVANNLYVVRAEQPE
GYTYSLGIGYESRLLSEANAWELPATVPPRQVLRVLKGQRFEDHGSMINGQPVDLAAVWA
AGSGPEPVTLQPVGWTPPYAWRPAPTSEVATRVRQGAGAGRLW
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtggccgctgacggcagcggcacccatcgcagcgtgcaggccgcgctggaggccctgcct
gctgcgggcggcgatgggcgacgcattaacatcctcatccgcccaggcgtctaccgcgaa
gccgtgtgcgtgcaaggcaaggcaccgttccggctgtacggactcggagacgccaaggac
gtggtgatcgtggccagccgatatgccggactggagcggccgatgccggcctccgcgacg
aaggcggaacggcaggaagtgtccgagcaggtgcgccgcgtggcgctgccggacggctgc
caggtgccgctgggcaccgcagcgcccctggggccaggggcggctgcgacgggagcagcg
acgggtgcagcgaccatcgtttcaaccagcccccccacctacggcacccccggcagcgcc
agcgtgaccctgctgaccgacgacgtccagctccagcgactgaccatcgccaacgacgcc
atggacgcggtccgcgccggggagggctatccgccaggcgccggcgagaagggcggcgcc
caggccgtggcgctgttcacccggggcgaccgacttcagctggaagaggtgcgactcctg
ggtcaccaggacaccttcgaggcggagcgcgccacgggacgccccggccgggtgctggtg
cgtcgcagcgagatccgcggcgatgtcgacttcatcttcggcggcgccaccctggtgatc
gacgacagcctgatcgtcagccgggccggtcggcgccaggcgggcaacggcggtcatgtc
atcgcccccagcacgccgcaggacgagccgtacggcttcctcatccagcgcagccgatgg
ctggccgaacccggcgtcccgcccgtcagcatcagcctgggccgcgcctgggaccggggc
gtcaccccggggacctggcaacccggccccgccgtgcccaacggccaggcggtgctgagg
gacaacctcctgggcccgcatctcaccggctgggctgcgtcgacggcccgcaggcccttc
agcaccgacggccagggcgccaaccgcatggcggagcatcgcaaccaggcgctgcccctg
gcggccttcgagcgcctgccggacggcgatggctgggcctccatcgatgacggcacccgc
gggggtgcccaggccggtctcgacgccatccgctgggtccgcacgcgcagcgagctcgat
gccgccgtggcgctgggcgacgtgcccaagatcatcgccgtggcgggccgcatcgacctg
gccgccgatgcggccggacgcccgctgggcatcgacgccttccgcgatccggccttcgac
ctggagtccttcgccaaagcctacgacccggccacctggggacgtcgcgcgccggagggg
ccgctggaagacgcccgccgccgctccgcccgcaaacaggcggcgcaggtcatggtgcgg
attccttccaacaccacggtgatcggcatcacgccggatgccggctttgatggtggctcc
ctgatgctggagcgggtgcggcaggtgattctgcgcaacctgcgcttctccgatgcctac
gactatttcccggcctgggacccgcaggacaacggccacggggagtggaactccgagtac
gacacggtgtccctgcgcgaggcggatcaggtctgggtcgaccactgcagcttcgatgac
ggccagcggccggaccgtagtgaaccgatcgtgctgggccgcccgctgcagcggcacgac
gggctgctggacatcacccggcaatcggatcgtgtgaccgtgtcctggaacctgttccgg
cagcacgacaagaccatgctgatcggcggcagcgacaaccaccgcgaggaccgtggaagg
ctgcgggtgacgctgcaccacaacctctgggaagcggtgaaggagcgcacgccccgggtc
cgctacggccaggtgcatgtggccaacaatctgtacgtggtgcgggcggagcagccggag
ggctacacctattcgctggggatcggctatgaatcgcgcctgctgagcgaggccaatgcc
tgggagctgccggcgacggtgcccccgcgccaggtgctgcgggtgctcaaggggcagcgc
ttcgaggaccatggatcgatgatcaacggacagccggtggacctggcggcggtatgggcc
gccggctccgggcccgagccggtcactttgcagccggtgggctggaccccgccgtacgcg
tggcgcccagcccccacatctgaagtcgccacccgtgttcgccagggcgcgggcgcgggt
cgactgtggtga
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