Roseateles depolymerans: RD2015_2698
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Entry
RD2015_2698 CDS
T04166
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rdp
Roseateles depolymerans
Pathway
rdp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RD2015_2698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rdp03019
]
RD2015_2698
03400 DNA repair and recombination proteins [BR:
rdp03400
]
RD2015_2698
Enzymes [BR:
rdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RD2015_2698
Messenger RNA biogenesis [BR:
rdp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RD2015_2698
DNA repair and recombination proteins [BR:
rdp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
RD2015_2698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
DUF3553
AAA_22
MSSS
Motif
Other DBs
NCBI-ProteinID:
ALV07163
UniProt:
A0A0U3N4M2
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All DBs
Position
3177052..3178980
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AA seq
642 aa
AA seq
DB search
MPTRPSRAPRAAAAALPSPRQLQQQLQRFGLRRWRPGQEEVVDRVLRGLNTLSVMPTGAG
KSLCFQVPASLLPHRTLVVSPLIALMQDQCERLNGLGVAAVQLHSGLDAATLRQQNEAAL
DGSAKVVLVTPERLSDDEWLTALAASGPTDLLVVDEAHCICEWGHDFRPAFLKIGEAVQR
LGRPTVLALTATATDEVMADIAEQLRIPRSGCLAASSFRANLRYRVEPLADEDDKRQRLL
QRVAERQGPSIVYTATVKAAEAAHQALRDAGHDAVLYHGRLRAAQRQAAQEAFMSGQSPV
MVATNAFGLGIDKADIRQVIHYQLPAGLDVYYQESGRAGRDGQPADCTLLFVHSDKAVQQ
FFLNGRYPRPEDATALQEALRTAPPVPADGPAAWTLEALHERLQRPLNKLKVLTGLLERE
GWLDRDEHGGLRLVDPPPGDRDALAETLQRYEDKEEQDRKRLEQMVFYAQTGLCRWQVLL
EAFGEGQDVQRCHGCDNCQRMDVHQQELRLREAVAEAADEVEREAASSAKGDAATGARAH
TQTGSNVTPIEAALSGARSTGAIGSEGASHAQGAKAPARSTPAASPPPAFQPGDIVRVPR
YGLGEVISASTESVTVRFGREERSFLPSFVRKARMPKPRKAA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcccacacgtccctcccgcgcccctcgcgccgccgccgcggccctcccgtccccacgc
cagctgcagcagcagctccagcgattcggcctgcgtcgctggcggcccggccaggaagaa
gtggtggaccgggtgctgcgcgggctcaacacgctgtccgtcatgcccaccggcgcgggc
aagtccttgtgcttccaggtgcccgccagcttgctgccccaccgcaccctggtcgtctcc
ccactgattgccttgatgcaggaccaatgcgaacgcctcaatggcctgggcgtggccgcg
gtccagctccacagcggcctggatgccgccacgctgcgccagcaaaatgaagcggccctg
gacggctcggccaaggtggtgctggtcacgcctgagcgcctgagcgacgacgagtggctg
actgccctcgccgcctccggcccgaccgacctcctggtcgtggatgaagcccactgcatt
tgtgaatggggccatgacttccggcccgccttcctcaagatcggcgaggccgtccagcga
ctgggccggccaaccgtgctggccctgaccgccacggccaccgacgaagtgatggccgat
attgcggagcaattgcgcatcccgcgcagcggctgcctggcggccagcagcttccgcgcc
aacctgcgctaccgcgtcgagcctctggccgatgaggacgacaagcgccagcgcctgttg
caacgggtcgcggagcgccaggggccgtccatcgtctacaccgccacggtgaaggccgcc
gaggcagcccatcaggcgctgcgcgacgcaggccatgacgcggtgctctatcacggccgc
ctgcgtgcggcccagcggcaggcggcgcaggaggccttcatgtccggccagtccccggtg
atggtggccaccaatgcgttcgggctgggcatcgacaaggcggacatccgccaggtcatc
cactaccagttgcccgccgggctggatgtctactaccaggaatccggccgcgccggccgt
gacggtcagccggccgactgcacgctgctgtttgtccacagcgacaaggcggtgcagcag
ttcttcctgaacggccggtatccccgcccggaagatgcgacagccttgcaggaggcgctt
cgcacggccccgcccgttcccgcggatgggcctgctgcctggacgctggaagcgctgcat
gaacgactgcagcgcccgctcaacaagctgaaggtgctgacggggctgctggagcgcgaa
ggctggctggaccgtgatgagcacggcggcctgcgtctggtggatccgccgccgggtgac
cgggacgccctggccgagacgctgcagcgctacgaagacaaggaagagcaggaccgcaaa
cggctggagcagatggtgttctacgcgcagacgggcctgtgccgctggcaggtgctgctg
gaggcctttggtgaggggcaggatgtccagcggtgccacggctgcgacaactgtcagcgg
atggacgtccatcagcaggagttgcggctccgggaagcggtggcggaagcggcggatgag
gtggagcgggaggcggcatcttccgcgaaaggagacgcggcgacgggcgcccgtgctcac
acccagacgggtagcaacgtcacgcccatcgaggcggcgctgtccggcgccaggtccacg
ggcgccatcggcagcgagggggcgagccacgctcaaggcgcgaaggcgcccgccaggtcc
accccggcagcatcaccgccccctgccttccagcccggcgacatcgtgcgcgtgccgcgt
tatggccttggagaagtgatcagcgccagcacggagagcgtgacggtgcgattcggccgt
gaagagcgcagcttcctgccgtcgttcgtgcgcaaggccaggatgcccaagccgcgaaaa
gcggcgtga
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