Roseateles depolymerans: RD2015_3656
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Entry
RD2015_3656 CDS
T04166
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
rdp
Roseateles depolymerans
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rdp03016
]
RD2015_3656
Enzymes [BR:
rdp01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
RD2015_3656
Transfer RNA biogenesis [BR:
rdp03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
RD2015_3656
Prokaryotic type
RD2015_3656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
ALV08111
UniProt:
A0A0U3LJ41
LinkDB
All DBs
Position
complement(4259055..4260092)
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AA seq
345 aa
AA seq
DB search
MTDLHYTSLPSWPNAYPASGATATLKSFNEDFNVTELPLQLPSGAGEHIWLDIEKNGANT
AFVAQQLAEAAGVQDKDVGYAGLKDRYAITRQWFSIYLPKGDTPDLTQLQHPEFKVLSQS
RHVKKLRPGDLQGNRFRIVLREVTGDRAAIEANLQSVASQGVPNYFGAQRFGHDGGNVEQ
GRMMLAREIRVRNPKKKGLYLSAVRSFVFNEVLAARIQQGLWGRTLPGDVMDEAGLPTGP
LWGRGRVSTTDDAQALENGIAGRHAALCDGMEHAGLDQERRPLVARPLEMSWDWPQADQL
VLSFTLPPGNYATSVLNEILHTREPERHSEGEGQGANDGEGTTAE
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatctccactacaccagcctgccgtcctggcccaacgcctatccggccagcggc
gccacggccaccctgaaaagttttaacgaggacttcaacgtcaccgaactgccgctgcag
ctgccttcgggcgccggcgagcacatctggctcgacatcgagaaaaacggcgccaacacc
gctttcgtggcgcagcaactggccgaagctgctggcgtgcaggacaaggatgtgggttat
gccggtctcaaggaccgctacgccattacccgccaatggttcagcatctacctgcccaag
ggcgacacgcctgacctgacccagctccagcatcccgaattcaaggtgctgagccagagc
cgccatgtgaagaagctgcggcccggtgacctgcagggcaaccgcttccgcatcgtgctg
cgcgaagtgaccggcgaccgcgccgccatcgaagccaacctccagtcggtggcgtcccag
ggcgtgcccaattacttcggcgcgcagcgcttcggccatgacggcggcaatgtcgagcag
ggccggatgatgctggcgcgcgagatccgcgtgcgcaacccgaagaagaaggggctgtac
ctgtcggcggtgcggtcgtttgtgttcaacgaagtgctggcggcccgcatccagcagggg
ctgtggggacggaccttgcccggcgatgtgatggacgaggccgggctgcccaccggcccg
ctctggggacgcggccgcgtgtccaccaccgacgacgcacaggcgctggagaacggcatt
gccgggcgtcacgccgccctgtgcgacggcatggagcatgccgggctggaccaggagcgt
cgcccgctggtggcacgtccgctggagatgagctgggactggccgcaggcggatcaactg
gtgctgagcttcaccttgccgccgggcaactacgccacgtccgtgctcaacgagatcctg
cacacccgcgagcccgagcggcatagcgagggcgagggccaaggggcgaatgacggcgag
ggcaccaccgccgagtaa
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