Roseateles depolymerans: RD2015_4145
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Entry
RD2015_4145 CDS
T04166
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
rdp
Roseateles depolymerans
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rdp03016
]
RD2015_4145
Enzymes [BR:
rdp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RD2015_4145
Transfer RNA biogenesis [BR:
rdp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RD2015_4145
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ALV08594
UniProt:
A0A0U3LQ76
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All DBs
Position
4820157..4822199
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AA seq
680 aa
AA seq
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MFALFEDAGKFLAGRVMSEAESSMQIELDSGKRVKVKSANVLLKFDKPSPAELMADGQRL
AQEIDLDLAWEFAPETEFGFADLARDYFDVKATLSQQAGALFRLFEAPHYFRRMGRGQFK
KAPADIVKAALLGIERKKQIAAQIEEWATELAAGRCPAPIAEQIYRILFRPDKNGPEYKA
LVEAARRSQKAPLDLLKDAGAITSPYQFHWKRFLFEHFPKGTGFPALSAPAIKDELPLAS
VRAFSIDDSATTEIDDALSVQGLGTGTVVFGVHIAAPGLAIQPDSPVDKVARDRFSTVYM
PGWKLTMLPDEVVQAYTLIEGRDCPAVSIYLTLDEATLEITGRETRLERVPIAANLRHDK
LDKVITDATLTGAEPADYDFAPELAFAYRLARDLKAKREVVRGKPETFNRPDYNFRLECN
GDHEPDGSEQVSIGVRQRGAALDLIVAEAMILANSSWGAYLAECGVPGIYRSQASLAPGI
KVRMGTKPAPHAGMGVSQYTWATSPLRRYVDLVNQWQIIACARHGRTAALVAPFKPKDAQ
LFSIISGFDAAYSAYNGFQSGIERYWTLRYLKQQGITELTASVMKEGLVRADDLPLVFRA
LGCEQLPRHAHVKVRITGLDELTLDVHASLIERLDTNDAAQDAGDAEEDEEPSGVLTLAI
DVNAEDAAGAPSEPAPPGAA
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccctcttcgaagacgccggaaaatttctcgccggccgcgtgatgtccgaagcc
gaatcctcgatgcaaatcgaactggattcaggcaagcgcgtcaaagtgaaatccgccaat
gtgctgctgaagttcgacaagccctccccggccgaactgatggcggacggccagcggctg
gcccaggagatcgacctggacctggcctgggaatttgcgcccgagaccgaattcggtttt
gcggacctggcccgcgactatttcgacgtcaaggccaccctcagccagcaggcgggtgcg
ctgttcaggctgttcgaggcgccgcattacttccggcgcatgggccggggccaattcaag
aaggcgccggcggacatcgtcaaggcggcgctgctgggcatcgagcgcaagaagcagatc
gccgcccagatcgaggaatgggcgaccgagctggccgccggccgctgcccggccccgatt
gcggagcagatctaccgtatcttgttccgccccgacaagaacggcccggaatacaaggca
ttggtggaagcagcccgccgcagccagaaggcgccgctggacctgctcaaggatgcaggg
gccatcaccagcccttatcaattccactggaagcgcttccttttcgagcacttccccaag
ggcaccggcttccccgccctgtccgctccggccatcaaggacgagctgccgctggcgtcg
gtgcgcgccttctccatcgacgactccgccaccacggaaattgacgacgcactgtcggtg
cagggcctgggcaccggcacggtggtgttcggcgtgcacattgccgcgccgggtctggcc
atccagccggactcgccggtggacaaggtcgcgcgggaccgcttcagcaccgtctacatg
ccgggctggaagctcaccatgctgcccgatgaggtggtgcaggcctacacgttgatcgaa
ggccgggactgccccgccgtcagcatctacctgaccctggacgaggcgacgctggagatc
accggccgcgaaacgcgcctggagcgggtgcccatcgccgccaatctgcgccacgacaag
ctggacaaggtcatcaccgacgccacgctcaccggcgccgaacccgcggactacgacttc
gcccccgaactggcctttgcctaccgcctggcccgggacctcaaggccaagcgcgaagtg
gtgcgcggcaagcccgaaaccttcaaccggccggactacaacttccgcctggaatgcaac
ggcgaccatgaaccggacggcagcgagcaggtcagcatcggcgtgcgccagcgcggcgcg
gcgctggacctcatcgtggccgaggccatgatcctggccaacagcagctggggcgcctac
ctcgccgaatgcggcgtgcccggcatctaccgcagccaggccagcctggcgcccggcatc
aaggttcgcatgggcaccaagccggcgccgcatgcgggcatgggcgtgtcgcaatacacc
tgggccacttcgccgctgcgccgctatgtcgacctggtcaatcagtggcagatcattgcc
tgcgcccgtcatggacgtaccgccgccctggtggcgccgttcaagcccaaggatgcgcag
ctcttctccatcatctccggcttcgatgccgcctacagcgcctacaacggcttccagtcc
ggcatcgagcgctactggacgctgcgctacctgaagcagcagggcatcaccgagctgacc
gcctcggtcatgaaggaaggcctggtgcgcgccgacgacctaccgctggtcttccgcgcc
ctgggctgcgaacagttgccccgtcacgcccatgtgaaggtgcgcatcaccggcctggat
gaactgacgttggacgtgcacgccagcctgatcgagcgtctggacacgaacgacgcggcg
caggatgccggcgacgccgaagaggatgaagagcccagcggcgtgctcaccctggccatc
gacgtcaatgcggaggacgccgctggcgctccttctgaaccggcgcccccgggcgctgcc
tga
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