Roseateles depolymerans: RD2015_4464
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Entry
RD2015_4464 CDS
T04166
Name
(GenBank) Holliday junction ATP-dependent DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
rdp
Roseateles depolymerans
Pathway
rdp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RD2015_4464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rdp03400
]
RD2015_4464
Enzymes [BR:
rdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RD2015_4464
DNA repair and recombination proteins [BR:
rdp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RD2015_4464
RecFOR pathway proteins
RD2015_4464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
Mg_chelatase
TIP49
AAA_16
nSTAND3
AAA_22
AAA_14
AAA_3
Rad17
RNA_helicase
DUF815
NTPase_1
TsaE
AAA_18
AAA_33
ABC_tran
AAA_28
AAA_17
Sigma54_activ_2
AAA_24
Motif
Other DBs
NCBI-ProteinID:
ALV08905
UniProt:
A0A0U3MKA5
LinkDB
All DBs
Position
5214055..5215116
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AA seq
353 aa
AA seq
DB search
MSIQTDDFTPAPQQARLISAHPTSPNEDAIERALRPKLLDEYVGQAKAREQLEIFIGAAR
KRGEALDHVLLFGPPGLGKTTLSHIIAAELGVSLRQTSGPVLEKPKDLAAILTNLERNDV
LFIDEIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTN
PLRDRFGIVARLEFYTAQELQRIVTRSAALLGAPIEAAGALEVARRSRGTPRIANRLLRR
VRDYADVKGDGTITLPIAEKALAMLDVDPQGFDLMDRKLLEAVVHRFDGGPVGLDNVAAA
IGEEPGTIEDVIEPYLIQQGFLQRTPRGRIATLAAYRHLGVAPPRQAGQLFDE
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgagcatccagaccgacgacttcaccccggcgccccagcaggcgcggctgatcagcgcc
catcccacctcgcccaacgaggatgcgatcgaacgcgccctgcggcccaaactgctggac
gaatatgtgggccaggccaaggcgcgcgagcaactggagatcttcatcggcgcggcccgc
aagcggggcgaggcactggaccatgtgcttctgttcggcccgcccgggctgggcaagacc
accctgagccacatcattgccgccgagctgggcgtgagccttcgccagaccagcggtccg
gtgctggaaaagcccaaggacctggcggccatcctcaccaatctcgaacgcaatgacgtg
ctgttcattgacgagatccaccggctctccccggtcgtcgaggaaatcctctaccccgcg
ctggaggactaccagatcgacatcatgatcggcgagggaccagccgcccgctcgatcaag
ctggacctgcagcccttcaccctggtgggcgccaccacccgtgccggcatgctgaccaat
ccgctgcgggatcgcttcggcatcgtggcgcggctggagttctacacggcgcaggagcta
cagcgcatcgtcacccggtcggccgccctgctcggcgcgccgatcgaagcggccggcgct
ctggaagtggcgcggcgctcgcggggcacgccccgcatcgccaatcggctgctgcgccgc
gtgcgcgactatgcggatgtgaagggcgacggcaccatcactcttccgatcgccgagaag
gccctggccatgctggatgtggacccgcagggcttcgatctgatggaccgcaagctgctc
gaagcggtggtgcaccggtttgacggcggcccggtgggcctggacaacgtggcggccgcg
atcggggaagaaccgggcaccatcgaagacgtgatcgagccctatctgattcagcaaggt
ttcctgcagcgcaccccgcggggacgcattgccacgctggccgcgtaccggcacctgggg
gtggcaccaccgcgtcaggcgggacagctgttcgacgagtag
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