Roseateles depolymerans: RD2015_4642
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Entry
RD2015_4642 CDS
T04166
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
rdp
Roseateles depolymerans
Pathway
rdp02020
Two-component system
rdp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RD2015_4642
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RD2015_4642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rdp03021
]
RD2015_4642
Transcription machinery [BR:
rdp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RD2015_4642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
HTH_IclR
NAT_N
YlxR
Motif
Other DBs
NCBI-ProteinID:
ALV09083
UniProt:
A0A0U3NAA7
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All DBs
Position
5449911..5451458
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AA seq
515 aa
AA seq
DB search
MRPTLQVRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLASNPLLEPDEEHDTAAPPG
ASPAERVSDERVPDREERSTEGGESDGSGEATGAEEMRAEDFGTTERDDWENGTERDDFD
GIREQPSSSAGSGSEDDERPETEAPDASLQDVLRAQMAGMHLGEVDRAALLALIESLNDD
GYLEDPLEDLVRALLGEEAEDGADQEQREQLLDTFKCALKWLQSMEPAGVGARDLGECLE
LQLRTHPRSPEQALAIVICRRHLELLAKRDWRRLMSLTGADDDLLRGAQAMIATLEPKPG
RRFARSDNRPVVPDVIVQKAGRGFRVMINPDVLPKLRINELYAQALRATRGGVSNSPLGG
QLQEARWFIKNIQQRFDTILRVSEAIVERQRGFFTHGELAMKPLVLREIADELGLHESTI
SRVTTAKYMATPWGTFELKYFFGSSLSTEAGGNASSTAVRALIKQFIAAEDTSNPLSDSQ
LSTMLGEQGITVARRTVAKYREALKLAPANLRKSR
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgacgctacaggttcgcctgtcccagcatcttgcgctgacgcctcagctgcag
cagtccatccgtctgctgcagctctccacgctcgagcttcatcaggaagtcgagcagatg
ctcgccagcaaccccctgctggaacccgacgaggaacacgacaccgccgccccgcccggc
gcgagtccggccgagcgcgtgtccgacgaacgcgtgccggaccgcgaggagcgcagcacc
gagggtggcgagtccgacggcagcggggaagccaccggcgcggaagaaatgcgcgccgag
gactttggcaccaccgagcgcgacgactgggaaaacggcaccgagcgcgacgacttcgac
ggcatccgcgagcagccctccagcagcgcgggcagcggcagcgaggacgacgagcgcccc
gagaccgaggcgccagacgcctcgctgcaggatgtgctgcgcgcccagatggccggcatg
cacctgggcgaggtcgaccgggcggcgctgctggccctgatcgaatccctgaacgacgac
ggctacctggaagatccgctggaagatctcgtgcgggccctgctcggcgaagaagcggag
gacggggccgaccaggagcagcgcgagcaactgctggacaccttcaaatgcgccctgaag
tggctgcagtcgatggagcccgccggcgtcggcgcgcgcgacctgggtgagtgcctggag
ctgcaactgcgcacccatccgcgctccccggagcaggcactggccatcgtcatctgccgg
cgccatctggagctgctggccaagcgcgactggcgtcggctgatgtcgctcaccggcgcg
gacgacgatctgctgcgcggcgcccaggccatgatcgccacgctggagcccaagccgggc
cgccgcttcgcgcgcagcgacaaccggccggtggtgccggacgtgatcgtgcaaaaggcc
ggccggggttttcgggtgatgatcaatccggatgtgctgcccaagctgcgcatcaacgag
ctgtatgcccaggctctgcgggccacgcgcggcggcgtcagcaattcgccgctgggcggt
cagctgcaggaggcgcgctggttcatcaagaacatccagcagcgcttcgacaccatcttg
cgggtcagcgaggccatcgtggagcgccagcgcggcttcttcacccacggcgagctggcc
atgaagccgctggtcctgcgggagatcgccgacgagctgggcctgcatgaatccaccatc
tcccgggtgaccacggccaagtacatggccacgccctggggcaccttcgagctgaagtat
ttctttggctccagcctttcgaccgaggcgggtggcaatgcgtcgtccaccgccgtgcgg
gccctgatcaagcagttcatcgccgccgaggacacgagcaacccgctgtcggacagccag
ctctccaccatgctgggcgagcagggcatcaccgtggcgcggcgcaccgtggccaaatac
cgcgaagccctgaagctggcgcccgccaacctgcgcaaatcacgctga
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