Roseateles depolymerans: RD2015_516
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Entry
RD2015_516 CDS
T04166
Name
(GenBank) Sigma54 specific transcriptional regulator with GAF sensor, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
rdp
Roseateles depolymerans
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rdp03000
]
RD2015_516
Transcription factors [BR:
rdp03000
]
Prokaryotic type
Helix-turn-helix
Other families
RD2015_516
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
GAF
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
HTH_30
HTH_17
AAA
HTH_23
PAS_4
HTH_29
Mg_chelatase
IclR_C
AAA_2
AAA_16
HTH_Tnp_ISL3
HTH_7
HTH_22
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
ALV05017
UniProt:
A0A0U3M9Q3
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Position
598597..601185
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AA seq
862 aa
AA seq
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MSKTSIAAVAPSRLRAARRELLETGELRLNLPDAGLCRSWLRSHAAGLSPVGRTPGAPHA
SSAQLMRALEQQHELVAHARPVMQDLFAQTRDSDGLVILSDGQGLLLQALGDGRFVDRAQ
RVALRPGAIWDERWRGTNAIGTALVERRPVAVMGGEHYLERNGFLSCTAAPIRDPQGRVL
GVLDISGEQRSFHRHTLALVRMAARSVEHRLFQTRHADALRLQLHPEREGLGTAGEGLLA
VSEEGWIIGANETALGWLGEEAARSLRLEAVLPMDWLAVLRWACMDDAAPQLMRREGDAP
ALWMRASVPVGWRRRMVGMGLPSPSLAHARDADAATGAGTGARIAKDTGTDASAGAGAGS
ATGAGTGTDAGTGTGTSNQPYLNLATSSAVKIDQINVNDTPRAALDQRDPVAEVNTIGPL
SIEHGTCAETSVELTADASSLLAPNPGSPGRDPAATRRPDLELPPALAALDLGDPAVHQL
LRRLHKVLDKPIALLLQGESGVGKDVLARAVHDSGSRCKGPYVAVNCAALPEGLIEAELF
GYRGGAFTGASRDGATGRLRQAHGGTLFLDEIGDMPLPMQARLLRVLQDRQVQPLGGGAA
VNVDVQLICASHRPLREMVEQGRFREDLYYRINGLALTVPPLRARTDFAALVQRLLPRVA
VQTPRAVTMEPSLMTALLRYEWPGNIRQLEQALRVAMAMLEPWEQEIRIEHLPEDLQGAL
ENLTGIGMDAHGAAGVCGAGEAGGAGGAGGARSANGANGVSRTNGASGANGANGANGANG
ANGAGGARGVEGPATCSGLAPRPRKLQPATQSSLDVSPEAGEALRQHAQAHARQVLTACA
GNVSEAARRLGIGRNTLYRMLR
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagacctcgatcgccgccgtggcgccgagccggctgcgtgccgcccggcgggaa
ctgctggagaccggcgaactgcgcctgaacctgccggacgcgggcctgtgccgcagctgg
ttgcgcagccatgcggccgggctcagtccagtgggacgcacgcccggggcgccgcatgca
tcgtcggcgcagctgatgcgggcgcttgagcagcagcatgaactggtggcccatgcgcgg
ccggtgatgcaggacctgtttgcccagacgcgggacagcgacgggctggtcatcctctct
gacggccaggggctgctgctgcaggcgctgggagacggccggttcgtggaccgtgcccag
cgcgtggcgctgaggccgggggccatctgggacgagcggtggcgcgggaccaatgccatc
gggacggcgctggtggagcggcggccggtggcggtgatgggcggtgagcactacctggag
cgcaacggcttcctcagctgcaccgcagcgccgatccgcgacccgcaggggcgggtgctg
ggggtgctggacatttccggcgagcagcggagttttcatcgccacacgctggcgctggtg
aggatggcggcccggtcggtcgagcaccggctgttccagacgcgccatgcggatgcgctg
cggctgcaattgcatcccgagcgcgagggcctggggacggccggcgaagggctgctggcg
gtgagtgaagaggggtggatcattggggccaatgagacggcgctgggctggctgggcgag
gaggcggctcggtcgcttcgactggaggcggtgctgccgatggactggctggcagtgctg
cgctgggcctgcatggacgacgcggcgccgcagctgatgcggcgggagggcgacgcaccg
gcgctgtggatgcgggcgagcgtgcctgtgggctggcgtcggcggatggttggcatgggt
ctgccgtcgccgtcgctggcgcatgcgagggatgcggacgctgcgaccggtgctggcact
ggcgcccgcatcgccaaggacaccggtactgacgctagtgctggtgctggtgctggcagt
gccactggagccggcacaggcactgacgctggcactggcactggcacctccaatcaacct
tacctcaacctcgccacttccagcgcagtgaagatcgaccagatcaacgtcaacgacacc
ccccgtgctgcactcgaccagcgcgacccggtggccgaagtcaacacgattggccctttg
tctatcgagcacggaacctgcgccgagacgtctgtcgagctcaccgccgacgcttcctcc
ctgctggcgccgaatcccgggtcgcctggaagagacccagccgccacccggcgtccggac
cttgagttgccgccggccctggccgccctggatctgggcgacccggccgtccaccaattg
ctgcgccgccttcacaaggtgctggacaagccgattgcgctgctgctgcaaggcgaatcc
ggtgtcggcaaggacgtgctggcccgcgccgtgcacgacagcggatcgcgctgcaagggg
ccctatgtggcggttaactgtgcggcgctgccggaagggctgatcgaagcagaactgttc
ggctaccgcggcggtgcgttcaccggggcctcgcgtgacggtgccacagggcgcctgcgg
caggcgcacggtggcaccctgttcctggatgagatcggcgacatgccgctgcccatgcaa
gctcgactcctgcgcgtgttgcaggaccggcaggtccagccgctgggcggcggcgccgcg
gtgaatgtggatgtgcagctgatctgcgccagccaccggccgctgcgggagatggtggag
caagggcgcttccgggaggatctgtattaccgcatcaatgggctggccttgacggtgcct
ccgctgcgagcgcgtacggacttcgccgcgctcgtgcagcggctgttgcctcgtgtggcc
gtgcagacgccccgtgcagtgacgatggagcccagcctcatgacggcgctgctgcggtat
gaatggcccggcaacattcggcagctggagcaggcgctgcgggtggcgatggcgatgttg
gagccctgggagcaagagatccggattgaacatctgccggaggaccttcaaggcgcgttg
gaaaacctgaccggcatcgggatggacgcacacggggcggccggggtgtgcggagcgggt
gaggcgggcggtgccggtggtgcgggtggtgcaagaagtgcgaacggcgcaaacggcgtg
agccgtacgaacggtgcgagcggtgcaaacggtgcgaacggtgcgaacggtgcgaacggt
gcgaacggtgcgggtggtgcgcgtggggtggagggccccgcgacgtgcagcggtcttgcg
ccgcggccccgcaagctccagcctgcgacgcaatcctccctggacgtcagtccggaggcc
ggcgaggcgcttcgccagcacgcgcaggcgcatgcgcgccaggtgttgactgcatgcgca
gggaatgtctccgaggcggcccggcgtttgggcatagggcggaatactctgtatcgcatg
ctgcgctga
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