Rhodococcus erythropolis BG43: XU06_04020
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Entry
XU06_04020 CDS
T03842
Name
(GenBank) ATPase AAA
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
reb
Rhodococcus erythropolis BG43
Pathway
reb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
reb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XU06_04020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reb03400
]
XU06_04020
Enzymes [BR:
reb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XU06_04020
DNA repair and recombination proteins [BR:
reb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XU06_04020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PDDEXK_1
AAA_25
ResIII
Motif
Other DBs
NCBI-ProteinID:
AKD96042
LinkDB
All DBs
Position
871463..874780
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AA seq
1105 aa
AA seq
DB search
MDFDLLGPLPTGTTVLEASAGTGKTYAIVGLATRCVAEGLADISQVLLVTFSRAATQELR
ERARERFAGVSAALVDPEAARRSDDDLVSYLATADDEEIGVRRRRLLRALAEFDAGTITT
THSFCQRMLDGLGIAGEREPDTTFVESVDDLISEVVSDLYLSRYSRTDSSPPFSTKDALA
IARSAVGDGQAILEPDGEEETAPGQRVLFAAAARLEVERRKRTKGIRDFNDLLTLLHGVL
TDPEYGPVACRRVREKFKVVLIDEFQDTDPLQWDILRLAFHGHTTLVLVGDPKQAIYAFR
GAEVLSYLDAVNQADAHQELTTNWRSDPGLLAALEHLYGGAALGNEGIVAHPVEASHKKS
RLSGPVPMRVRHLPRTGAGPLNRSGFPAVGRLRSRVADDVAADVVGLLGSDARLAVDGDP
RPVEPGDVAVLVRTHKQVAMIRDALDAVGVPSVLTGGSSVFATPSATQWLWLLQAIEQPH
RSDRVRLTALSPIFGRTAEELDVDGDNVVAELAGQLRSYSGLFARVGFAAVFERISAETN
LEKRVLAASSGERDFTDLRHVAQLLGRVATEEAFGLSALVRWLSDRIKDPTSGSATDRSR
RLDSDAAAVQIATVHATKGLEFPIVYVPFSWESVGGFNSPTQLLHDPDGRRILDVGGQEG
PGHNARKTVAEAEEAGEELRLLYVALTRAQCQLVLWWAPSYGTSRSPLHRLMLGRTPGIA
EPARVVKVLDDGTTAARLATWPAAASDVISVEPVGPHPPSPVQWSGAAANVTELAAARFD
RDLDTLWRRTSYSALTAGAHHAVTSTDSEVEDPEKDDEPEDSVDVGTVTPSPLEALPSPM
NGLPAGAAFGTLVHEVLEVVDTAASDLRAELRIRCAEAVSVRAAEVDSEALADALLLVMQ
TPLGFGTLATIAPKDRLPELDFELPLAGGDDPVSMSVTLRGVSELLRRHLPPDDILASYA
DHLERVETSPMRGFLTGSIDAVLRIPGPSFVIVDYKTNRLGRGDLTAANYTRELMATEMM
RSHYPLQALLYSVALHRYLRWRLPDYDPHRHLGGAQYQFVRGMLGPDSPPECGVFEWKPP
AQLTVELSDLLAGLDASHTVGEKIR
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
gtggacttcgaccttttggggccgctaccgaccggcaccacggtgttggaagcgagcgcc
ggaactggcaagacctacgcgatcgtcggactcgcgacccgttgtgttgccgaaggtctc
gctgacatttcgcaagttctgctggtgacattcagccgggccgccactcaggaacttcgt
gagcgtgccagggagaggttcgccggagtgtccgccgctctggtcgacccggaggcggcg
aggcggtcggatgatgatctggtgtcgtacctcgccacagctgacgacgaggagatcggc
gtgcggcgtcgtcgactcctgcgcgctctcgcggagttcgacgccggcaccatcacgacc
acccacagtttctgtcagaggatgctcgacggactcggcatcgccggggaacgcgaaccc
gacacaacttttgtggagtcggtcgacgacctgatcagtgaggtcgtctcggatttgtac
ctcagccgctacagccggacggactcgtctccaccgttttccacgaaggacgcgctggcc
attgcccgaagcgcagtcggcgatggccaggcaattctcgaacccgacggcgaggaggag
accgctcccggtcagcgagtcctgttcgcggcggctgctcgtctcgaggttgaacgacgt
aagcggaccaaaggaattcgcgacttcaacgatctcctgacgctgctgcacggcgtgttg
acggatccggaatacggccccgtcgcgtgccgtcgggtgcgcgagaagttcaaggtcgtg
ctgatcgacgagttccaggacaccgatccgttgcagtgggacattctgcggttggccttc
cacggtcacaccaccctggtcctggtcggtgatcccaaacaagccatctatgcgttccgc
ggggcagaagtcctgagttatctcgatgcggtcaatcaggcggatgcgcaccaggagttg
accaccaattggcgcagcgatccagggttgttggcggcactcgaacacctctacggcggc
gccgcactgggtaacgagggcatcgtcgcgcatccagtagaggcttcgcacaagaagtct
cggttgtccggcccggtgccgatgcgtgtacgccatctgccgcgtaccggagccggaccg
ctcaatcgttcgggatttccggccgtcggcagacttcgcagtcgcgtcgccgacgacgtc
gcagcagacgtggtcggactgctgggcagcgatgcccgcttggcagtcgacggtgatccg
cgcccggtcgagccgggagacgtcgcggtattggtgcgcacccacaagcaggtggcgatg
attcgcgatgccctcgatgccgtaggtgtaccgtccgtattgaccggcggttccagtgtt
ttcgcgacacccagcgcaacacagtggctgtggctgctgcaggcgatcgagcagccacac
cggtctgatcgcgtccggttgaccgccctctctccgattttcgggcgcaccgccgaagaa
ttggacgtcgatggcgacaacgtcgtcgcggaactcgcgggtcaactgcgctcgtactcc
gggttgttcgcacgcgtcgggttcgcggccgtgttcgaaaggatctccgccgaaacgaat
ctggagaagcgtgtactcgcggcctcgtccggcgaacgagatttcaccgatctgcggcac
gtcgcacaacttctcggccgcgtcgccaccgaggaagcgttcgggttgagcgcattggtt
cgctggctctccgatcggatcaaggacccgacgtccgggagtgccaccgacagaagccgt
cgcctcgacagcgatgctgccgctgtacaaatcgcaaccgtgcacgccaccaaagggctc
gaattcccgatcgtctacgtcccgttcagttgggagagcgtgggcggcttcaactctccg
acgcagttgttgcacgatccggatgggcgccgcatcctcgacgtcggtgggcaggaaggc
ccggggcacaacgccagaaagactgttgcggaggctgaagaagcgggcgaagaactgcgg
ctgctgtacgtggcgctgacccgggcgcagtgccaactagtgctctggtgggcgcccagc
tacgggacctcacgctcgccactgcaccggttgatgctcggacgtacacccggcatcgcc
gaacctgctcgggtagtgaaggtgctcgacgacggtacaaccgcagcacgactcgcgacg
tggccggcagcagcttccgatgtgatctcggtggaaccagtaggtccacatccaccgtcg
cccgtccagtggtccggtgcagccgcgaacgtgaccgaactggccgcggcgcgtttcgat
cgagacctggacactctctggcgtcgtacgtcgtactcggcactgaccgccggagcgcac
cacgcggtcacgagcaccgacagtgaggtagaggatcccgaaaaggacgacgagccggag
gattccgtagacgtcgggaccgtcaccccctcaccgctggaggcgttgccttcaccgatg
aacggtcttccggcgggcgccgcattcggcacgctggtgcatgaagtgctcgaggtggtg
gacactgctgcttcagacctgagagcggaactccgtatacgctgcgcggaggcggtctcg
gttcgggcggccgaggtcgactccgaagcactcgcggatgcgttgttgctggtgatgcag
actccactgggattcggaaccttggccacgatcgcgccgaaagatcgtcttcccgaactc
gatttcgaactcccactggccggtggcgacgatccggtgtcgatgagtgtcacacttcgc
ggagtgtcggaactgttgaggcgacaccttcccccggacgacattctggcgtcttacgcc
gaccatcttgagcgtgtcgagacgtcaccgatgcgcgggttcctgacgggcagtatcgac
gccgtcttgcggatcccgggcccgtcgttcgtgatcgtcgactacaagacaaatcggctg
ggccgcggcgatctgacggctgccaactacacgcgcgaactcatggcgacggagatgatg
cgctcgcactatcccttgcaggcactgctgtattcggttgcgctgcatcggtatctgcgg
tggcgactgcccgactacgatccgcatcgccatctcgggggtgcgcagtatcaattcgtg
cgtgggatgctcggcccggacagtccgccggaatgtggtgtattcgaatggaaaccgcct
gctcagctgacggttgaactatcggatctgctggccggtcttgatgcgtcccacacagta
ggggagaagattcgatga
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