Rhodococcus erythropolis BG43: XU06_04025
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Entry
XU06_04025 CDS
T03842
Name
(GenBank) recombinase RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
reb
Rhodococcus erythropolis BG43
Pathway
reb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
reb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
XU06_04025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reb03400
]
XU06_04025
Enzymes [BR:
reb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
XU06_04025
DNA repair and recombination proteins [BR:
reb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
XU06_04025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
RecD_N
AAA_11
UvrD-helicase
Viral_helicase1
Helicase_RecD
SH3_13
AAA_22
TraI_hel_assoc_N
AAA_24
UvrD_C
SLFN-g3_helicase
T2SSE
AAA_16
AAA_28
Motif
Other DBs
NCBI-ProteinID:
AKD96043
LinkDB
All DBs
Position
874777..876645
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AA seq
622 aa
AA seq
DB search
MTEAQLAQRAKGIVRIFNEAGVLVAADVHVATRVCSLGGETSEEVMLAAALAVRAVRSGS
VCLDLRRMRDVSVDNATEDELTSLPWPEPSEIVAALRLSPLVTGGNAGPLRPLRLVDTDD
GELLYLDRYFLQEQTIRRVLDERASTWPPADLKAVRTRLDSLFVDEKGPTTSPDRQRIAA
ALAATQWTTVIAGGPGTGKTHTVARILALLSEELGSNARIGLAAPTGKAAARLQESVREQ
TASLGLPEELAAMTLHRLLGWQRGSSSRFKYNATNRLPYDVVVVDETSMVSLTLMARLLE
AVRPDARLLLVGDPDQLTSVDAGAVLADLVARPVEVSGNPALTQLVGDDLTATGSEESLS
VDEQDRLRGGIIQLSRGRRFDGTIASLARAVRAGDSAEVLRILRSGDPAVSFHSPEDVDA
LRTDIVVSSEVVTRSAEEGDAIGALKGLESHRLLCAHRDGPYGVGRWAQQAMEWVGTASG
QFLDPTRWYPGQPLLVTANDYEAKIYNGDAGVIVQREDGVPIAAFQRGSDAFLIHPSQLS
SVQTVYAMTIHRSQGSQYDTVSVMLPAEASSLLTRELLYTAITRARNHVRVIGTEDSVRA
GVQRQVLRASGLRREIRPYDGP
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaggcgcaattggcgcagcgcgccaaagggatcgtgcgaatcttcaacgaagcc
ggggttctggttgccgccgatgttcatgtcgcgacgagagtgtgcagcctgggcggtgaa
acttccgaagaagtgatgctggccgcagcgttggcagttcgggccgtgcgatcaggttcg
gtgtgcctcgatctacgacggatgcgcgacgtgagcgtcgacaatgcgacggaagacgaa
ctcacgtcgttgccgtggcccgaaccgtcggagatcgttgccgcccttcggctgagccct
ctggtgaccggcggcaacgccggaccgctcaggcccctccggttggtcgacacggacgac
ggtgagcttctctacctcgatcggtactttctgcaggagcagacgattcggcgagtgctc
gacgagcgtgcgtccacgtggccgcccgccgacctgaaagcggtccgaacgcgcctggat
tcgctgttcgtagacgagaaggggccgaccaccagccctgatcgtcaacggatagccgct
gctctcgccgcgacacagtggacgacggtcatcgccggtgggcccggaaccggcaaaacc
catacggtcgcacgtattctcgctctcctgtcggaggagctgggttcgaatgctcgcatc
gggctggccgcaccgacgggtaaagccgcagcacgtctgcaagagtccgtacgtgagcag
accgcgagccttggccttcccgaagaactcgcggccatgaccctgcaccggctactcggt
tggcagcgggggagttcgagccgcttcaaatacaatgcgaccaacagacttccctacgat
gtggtcgtcgtcgacgagacgtcgatggtctccctcaccttgatggcgcgcctgctcgaa
gccgttcgccccgatgcccggctactgctcgtcggcgatcccgatcagttgacctccgtc
gacgccggcgctgttcttgctgaccttgtcgcccgcccggtagaagtcagtggaaatccg
gcgctgacacagttggtgggtgacgatctcacggccaccggttccgaagagtccctgagt
gtggacgagcaggatcgtctgcggggcgggatcattcaactctcacgcgggcgccgcttc
gacggaaccatcgcgtcgttggccagggcagtgcgagcgggagattccgctgaggttctg
cgtatcctgcgtagtggcgatcccgccgtctccttccactctcccgaggatgttgacgca
ttgcgcaccgatatcgttgtgagttccgaggtggtgacgaggtcggctgaggagggtgat
gcgatcggcgccctgaaaggactggaatcgcaccgtcttttgtgcgcgcaccgtgacgga
ccgtacggtgtcgggcggtgggcgcagcaggcgatggagtgggtcggcacggcatcaggg
caattcctggacccgacgaggtggtatccgggtcaacccctgttggtgacggccaacgac
tacgaggccaagatctacaacggggacgccggggtgatcgtgcagcgtgaggatggcgtt
cctattgccgcattccagcgggggagtgatgcgtttctgattcacccgagtcaactctcg
tcggtgcagaccgtttacgcgatgacgattcaccggagccagggcagccagtacgacacg
gtatcggtgatgctgccggccgaagcgtcgtcactactgacccgggagttgttgtacacg
gcgatcactcgcgccagaaaccatgtgagggtaatcggcacggaggattccgtgagggcg
ggagttcagcgacaggtgctcagggcaagtgggctgcgtcgggagatccgtccgtacgac
gggccgtga
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