Rhodococcus erythropolis BG43: XU06_11625
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Entry
XU06_11625 CDS
T03842
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
reb
Rhodococcus erythropolis BG43
Pathway
reb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
reb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XU06_11625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reb03400
]
XU06_11625
Enzymes [BR:
reb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
XU06_11625
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
XU06_11625
DNA repair and recombination proteins [BR:
reb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
XU06_11625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Phage_zn_bind_8
TackOD1
Auto_anti-p27
NFACT_N
IBR_1
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
AKD97315
UniProt:
A0AAX3VAK4
LinkDB
All DBs
Position
2523821..2524690
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AA seq
289 aa
AA seq
DB search
MPELPEVEVVRRGLQSHAVGAAIEAVEVLHPRAIRRHILGSEDLIGQLTGQTIASAERRG
KYLWLVLEPAGVGLVVHLGMSGQMLVQPPTVDWEKHLRIRLALDSGADLRFVDQRTFGGW
SISPLVEVDGTMLPESVAHIARDPMDAAFDLESVVKVLRGKHTEIKRAILDQTVVSGIGN
IYADESLWRAKIHGNRIAESLTRPKLRELLTAAHSVMGEALDQGGTSFDALYVNVNGESG
YFDRSLSAYGQENLPCPRCGAPIKREKFMNRSSFSCPRCQPTPRARRIA
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
ttgcctgagcttcccgaagtcgaagtcgttcgccgcggcctacagtctcatgctgtaggt
gcggcgatcgaggccgtcgaggtcctccatccccgcgcgatcaggcgccacattctcggt
tccgaggacttgatcggccaactcaccgggcagaccatcgcttcggcagagcgtcgcggc
aagtatctgtggctggttctcgagcctgccggtgtcggactggtggttcatctcgggatg
agcggacagatgttggtccaacccccgacagtcgactgggaaaagcacctacgcattcgg
ttggccctcgattccggggctgatcttcgattcgtcgaccagcggaccttcggtggctgg
tcgatttcacccctcgtcgaggtcgacggaacgatgctgcccgagtcggtggcgcacatc
gctcgcgatcccatggatgctgcgttcgatctcgaatccgtcgtgaaagtcctgcggggc
aagcacaccgagatcaagcgggcgattctcgaccagacagtggtctccggaatcggaaac
atctacgccgacgaatcattgtggcgtgcaaagattcacggcaaccgaatcgccgaatcg
ctcaccaggcccaaacttcgagaactgttgaccgcggcgcactcggtgatgggcgaggcg
ctcgatcagggcggtacgtccttcgacgcgctgtacgtgaacgtcaacggggaatcgggc
tacttcgaccggtcgctgtcggcgtacgggcaggagaatcttccgtgcccgcgatgcggc
gcgccgatcaagcgtgagaagttcatgaatcgatcgtcgttcagttgcccgcggtgtcag
ccgaccccgagggcacggcgaatcgcctag
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