Rhodococcus erythropolis BG43: XU06_13005
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Entry
XU06_13005 CDS
T03842
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
reb
Rhodococcus erythropolis BG43
Brite
KEGG Orthology (KO) [BR:
reb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
reb03019
]
XU06_13005
Enzymes [BR:
reb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
XU06_13005
Messenger RNA biogenesis [BR:
reb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
XU06_13005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
AAA_30
SLFN-g3_helicase
T2SSE
NACHT
ABC_tran
TsaE
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AKD97548
LinkDB
All DBs
Position
complement(2813601..2817506)
Genome browser
AA seq
1301 aa
AA seq
DB search
MSTTPPAPISPKRSDLKSALAQVSLRDESRLRRKLDRARTPDALVALAEEIETARARLAA
RSANVPAVSYPEALPVSQRKDDIATAISENQVVIVAGETGSGKTTQIPKICLELGRGVRG
LIGHTQPRRLAARTVAERIAEELDTELGDAVGYTVRFTDQVSDRTYVKLMTDGILLAEIQ
RDRMLRRYDTLIIDEAHERSLNIDFILGYLAQLLPRRPDLKVIITSATIDPERFAKHFAV
DGKPAPIVEVSGRTFPVEMRYRPLTVESGDITFDRDPVDAVCEAVDELSAEGEGDILVFL
SGEREIRDTADALRDRRLRNTEIVPLYARLSAAEQHKVFSPHTGRRVVLATNVAETSLTV
PGIRYVVDPGTARISRYSVRTKVQRLPIEPISQASARQRSGRCGRVAEGICIRLYSEEDF
ESRPAFTEPEILRTNLASVILQMTALSLGDIAAFPFVEPPDQRAVKDGIGLLEELGAIAR
GSEASHPELTPVGRELAQIPVDPRMARMLVEAKNNGCLHETLVIVAALSIQDVRERPAEF
QQAADEKHARFNVENSDFLAYLKLWDYLREQRNDLSSNQFRKMCRNEFLHWLRIREWQDL
HGQLRQITRGLGWTVGETPASENAIHQSLLAGLLSHIGLREGEKRDYLGARGSHFAIFPG
SGLFKKPPRWVMAAELVETSRLWARMSARIEPEWAEKLAPHLVKRTYSEPHWSSKRGSAM
AYERVTLYGVPLVTGRAVTYSRIDPEASRDLFIRHALVQGEWQTNHKFFHENRALLDNVE
ELENRARRRDILVDDETLYEFYEERIGQEAVSAKHFDQWWKTERRKNPSLLTFTPETVVN
SDAAAVLGGEYPDAWRQGDMQFPLTYQFEPGKDDDGVSAHIPVGLLAQLQPVGFDWLVPG
MRVDLVTALIKTLPKNIRRAVVPAPDYAAAALAAVKPRSEPLMTAMARELSHLGGIQIDA
KDFDPAALPDHLRMTFVVEDESGTVLAKGKDLAQLRRTLAPRVQKEVAKAATGTERAAAT
VWTSETLGALEPTITRSIGGQQVTGYPALVPENGGVAVRVLSTPAAQAQAMREGTRALLL
AAVPTQLKAVTAGLSNTQRLALGQNPDGGLEALVEDCRVAAANEVIAAHGGPVRTPEAFD
ALVKIARSELAGRVSAILRMIVPILEQAHQLSVVLDRSRGEAADDVREQLTSLLFPGFVA
ELGSARLRDLPRYLAAAKFRLEALPASAQRDQQAMDVLDRVYAAYDRLLSSLPEERRTAR
DVDSISWMIEELRVSLFAQSLGTPTPISEKRVLKAIEAIKR
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgtctacaacaccaccggccccaatctcccccaagcggagcgacctgaagagcgcgctg
gcgcaggtctcactccgcgacgagagtcgactccgtcgcaaactcgaccgtgcccgcaca
ccagacgctttggtggcgctggccgaggaaattgaaacggcgcgcgcacggttggcggca
cgctccgccaatgttcccgcagtctcgtatccggaagctctgcccgtcagtcagcgcaag
gacgacatcgcgaccgcgatctcggagaatcaggttgtcatcgtcgccggcgagaccggc
tcgggtaagacaactcagatcccgaagatctgtctcgaactcggacgtggcgtccgcggc
ctgatcggacatacacagcctcgccgactggcagcacgcaccgttgccgaacgtatcgcc
gaagaactcgacaccgaactcggcgacgccgtcggatacaccgtgcggttcaccgaccag
gtctcggaccgcacctacgtcaagctcatgaccgacggcattctcctcgccgaaattcag
cgcgaccgtatgctccgacgctacgacacgctgatcatcgacgaagcgcacgaacgcagc
ctcaacatcgacttcatcctcggttacctggctcagctgctcccccgccgacccgatctc
aaggtcatcatcacgtcggcgaccatcgatcccgaacgcttcgccaagcacttcgctgtc
gacggtaagcccgcgccgatagtcgaggtatccggtcgaacattccccgtcgaaatgcgt
taccggccactgaccgtcgagtccggcgacatcaccttcgaccgtgatcccgtcgacgcg
gtctgcgaggcggtcgacgagctgagcgcggagggcgaaggcgacatcttggtcttcctc
tccggcgaacgcgaaattcgcgacaccgcagacgctttacgcgatcggcgtcttcgcaac
accgaaatcgtcccgctgtacgcgcgactgtctgctgccgagcaacacaaagtgttctcg
ccgcacaccggccgacgcgtcgtccttgccaccaacgtggccgagacctcgttgaccgtt
cccggcattcggtacgtcgtcgatccgggaaccgcgcgcatttcgcgatattcggtgcgc
accaaggttcaacgattgccgatcgagcccatttcgcaggcgtcagctcgtcagcggtcc
gggcgttgcggccgcgtcgccgaaggaatctgcatccgcctgtattccgaggaggacttc
gagtcacggccggcgttcaccgagccggaaatcctgcggaccaatctcgcatccgtcatc
ttgcagatgacggccctcagtctgggcgacatcgctgccttccccttcgtcgaaccgccg
gaccagcgcgccgtcaaggacggaatcggactgctcgaagaactcggcgccatcgcgcga
ggttccgaggcaagccaccccgaactgacgccggtcggccgcgagctggcccagattccg
gtggatccgcggatggcacgaatgctggtggaagccaagaacaacggttgccttcacgaa
acccttgtcatcgtcgcggcgttgtccatccaggacgttcgcgagcggcccgccgagttc
cagcaggccgccgacgaaaagcacgccaggttcaatgtcgagaactccgacttcctggca
tacctgaaactgtgggactacttacgcgaacaacgtaacgatctgtcctccaaccagttt
cgcaagatgtgccggaacgagttcctgcactggctccgcatccgcgaatggcaggatttg
cacggtcaactccggcagatcacccgcggcctcggctggacggtgggtgagacacccgca
agcgagaacgcgatccatcagtcactcctcgccggcttgctctcacacatcgggctacgc
gagggcgagaagcgggactacctgggcgccaggggcagccacttcgcgatcttccccgga
tcaggactgttcaagaagccaccacgctgggtcatggccgccgaactcgtggaaacgtcg
agactgtgggctcgcatgtccgcgcgcatcgaacccgagtgggctgaaaagctcgccccg
cacctggtgaaacggacctattccgaacctcactggtcctccaagcgcggttcggcgatg
gcatacgagcgggtcactctctacggagttcctctggtgaccggccgcgcagtgacgtac
tcacgaatcgatcccgaggcctctcgcgatctcttcatccgccatgcgctcgtgcagggc
gaatggcagacgaaccacaagttcttccacgagaaccgtgcactgctcgacaacgtcgag
gaactcgagaaccgcgcgcgtcgccgcgacatcctcgtcgacgacgaaactctctacgag
ttctacgaagaacgtatcggccaggaagccgtatccgccaagcatttcgaccagtggtgg
aagaccgagcggcgcaagaatccgagtctgctgactttcacgccggaaacggtggtcaac
tccgacgcggctgcagtactgggcggcgagtacccggacgcctggcgccagggcgacatg
cagtttccgctcacttaccaattcgagcccggaaaggacgacgacggcgtcagcgcgcac
atcccggtcggcctgctcgcgcaacttcagccggtcggcttcgactggttggtccccggt
atgcgcgtcgatctggttactgctctgatcaagacgttgcccaagaacatccgacgcgct
gtcgtgcccgcacctgactacgccgccgcagcattggcagcagtcaaacctcgatccgag
ccgttgatgaccgcaatggcccgcgaactctcgcacttgggcgggatccagatcgacgcc
aaggacttcgatcccgccgcgctgcccgaccatcttcggatgacatttgtcgtcgaggac
gaatcgggcacggttctcgcgaagggtaaggatctggcgcagctacgacgcacgctcgcc
ccgcgcgtacagaaggaagtggccaaggcggcaaccggtaccgaacgggcagcggcaacc
gtctggacatccgaaacgctcggcgcactggaaccgaccatcactcgctccatcggcgga
cagcaggtaaccgggtacccagcactggtgccggaaaacggcggagttgccgttcgtgtc
ctgagtacgccggctgcgcaggcgcaggcgatgcgggaaggcactcgggcgcttcttctc
gcggccgttcccacccagctcaaggccgtgaccgccggcttgtcgaacactcagcgtctg
gctctcggccagaatccggacggcggcttggaggcactcgtcgaagattgccgggtggca
gctgcaaacgaagtgatagctgcccacggcggaccggtacgcacgcctgaggcgttcgac
gccctggtgaagatcgcacgctccgaactggccggacgcgtctccgcgatcctgcgcatg
attgttccgatcctcgaacaagcacaccaactgagcgtcgttctggaccgctcacgcggc
gaagcagcagacgacgtccgagaacagttgacctcactgctgtttccgggatttgtcgcc
gaattgggctcggcccgcctacgcgatttgccgcggtatcttgccgcagcaaaattccgt
ctcgaagctctacccgcaagtgcacaacgagatcagcaggcgatggacgtcctcgaccgg
gtgtacgcagcgtacgaccggttgttgagttcacttcccgaagagcgtcgcactgctcga
gatgtcgactcgatcagctggatgatcgaagaactgcgcgtgagcctgtttgcgcagtcc
ctcggtacacccacaccgatttccgaaaagcgagtcctgaaagctatcgaagcgatcaag
cgttga
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