Rhodococcus erythropolis BG43: XU06_17730
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Entry
XU06_17730 CDS
T03842
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
reb
Rhodococcus erythropolis BG43
Pathway
reb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
reb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XU06_17730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
reb03019
]
XU06_17730
03009 Ribosome biogenesis [BR:
reb03009
]
XU06_17730
Enzymes [BR:
reb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
XU06_17730
Messenger RNA biogenesis [BR:
reb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XU06_17730
Ribosome biogenesis [BR:
reb03009
]
Prokaryotic type
rRNA processing factors
XU06_17730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AKD98342
LinkDB
All DBs
Position
complement(3873700..3876933)
Genome browser
AA seq
1077 aa
AA seq
DB search
MADQSPTESDSSTTPEFPDKMRVHALAKLLGVTSKQVLAEAAALGTELRSAQSSLQRDVA
QRIHASLTSAAEAIEPVVAELDTLIDPVVEAPVAEEPVAEAPAEKPVRARRTRKKVVVEE
PAAEEPAAEETVDPAVAEISAGLDAAAALQSKEAEQSDLFTSFEAPQTHQPEVAPAAPQV
PLFLQPDLEAAEVAPRRRRARREPAAPAVVEEKQTTTEAETVVPEAAPVAVPAVEEPAVT
APQTEGESAESEDEDEDQPRRRRRGRRGRGRGRGEQGGEQGSDEESDTAAESEQESAPAA
VEKQTDDAAGEESGDKSESTADADSENADDSDLDADGSSRRRRRRRRRKTGTDGATDATA
TSEDDPPNTVVHEREPRNKTRVKDEVQGISGSTRLEAKRQRRRDGRDAGRRRPPILTESE
FLARREAVDRVMVVRDRADSGQPHATTQVAVLEDGVLVEHFVTNSASASMVGNVYLGRVQ
NVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGNSRKIEQALKPGDQVLVQVSKDPVG
HKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEILRDIVPADAGVIIRTAS
EGVSEEELARDVTRLQAQWAGIEEQAAAADTGKSGNPQALYEEPDMLVKVIRDLFNEDFS
KLVIEGEKAHTTVENYINSVAPDLLPRLEKYTPNNGIDVFAARRIDEQLAKALDRKVWLP
SGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVV
DFIDMVLESNRDLVLRRLTECLGRDRTRHQVSEVTSLGLVQMTRKKLGTGLVEAFSTTCE
HCHGRGIIVHSEPVEVKSSDDGGSRSGSQRSESGTSRKNKRGRGDKSPSTESNGQEAPAP
EVPAVDATVKRAHPVALAMASHHHDDDETVAAGSIESDSTGTSSGDDASKSADRQQDRPI
DTPAATERHDVPVVDSAAEEVSAVDNESAAASTEAAPRGRRRSRRASRAASAPVAEAAPE
VGTVFVIPTPEPVAEPVVENVPAPATEVPAEEEVVVVKRPRRRRAAARPAGPPVDGE
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
gtggccgatcaatccccaaccgaatcagattccagcaccaccccggaatttcccgacaag
atgcgcgtacacgcgctggcgaagctgctcggtgtcaccagcaagcaggtccttgccgaa
gccgcagcgctcggtaccgaattgcgcagtgcgcagtcgagtctccaacgggacgttgcc
cagcggattcacgcctcgctgacttccgcggccgaggccatcgagccggtcgtggccgag
ctcgataccctcatcgacccggtcgtcgaggcccctgttgcggaagagcctgttgcagag
gctccggccgagaagcctgtcagggctcgtcgcacccgcaaaaaggtcgttgtcgaagaa
ccggccgccgaagaacctgcagcagaagaaacagtggatccggctgtcgccgagatcagc
gctggactcgacgccgcagctgcgctgcagagcaaggaagccgagcagtccgatctgttc
acttccttcgaggcaccgcagacccatcagcccgaggtggctcccgccgcgccgcaggtc
ccgctgttcctgcagccggatctcgaagccgccgaggtagctccgcgtcgccgtcgcgca
cgccgcgagcccgctgcaccggcggtcgtcgaagagaagcagacaactacggaagccgaa
accgtcgttcccgaggcagcaccggttgcagttcctgccgtcgaagagccggccgtgacc
gcaccgcaaaccgagggcgagagcgccgagtccgaggacgaggacgaggatcagccgcgt
cgccgtcgtcgtggacgccgtggacgtgggcgtggtcgcggtgaacagggtggcgagcag
ggttcggacgaagagtcggataccgctgccgaatcggagcaggaatctgcccctgcggca
gtcgagaagcaaaccgacgacgctgccggcgaagaatccggtgataagtccgagtccacc
gctgatgcggattccgagaatgccgacgattccgatctcgatgccgacggatcgagccgc
cgtcgccgccgtcgtcgtcgtcgcaagaccggcaccgacggcgccaccgacgcgactgcg
acgtccgaggacgatccgccgaacaccgtcgttcacgagcgcgaacctcgcaacaagacc
cgcgtcaaggacgaggtccagggcatcagtggttcgacacgtctggaagcgaagcgtcag
cgtcgccgcgacggtcgtgacgccggtcgtcgtcgtccgccgattctgaccgagtcggag
ttcctcgcgcgtcgtgaggccgtcgatcgcgtcatggttgtgcgtgatcgagcagacagc
ggtcagccgcatgcgactacacaggtagcagtcctcgaagacggagtgttggtcgagcac
ttcgtcaccaactcggcgtccgcgtcgatggtcggcaacgtgtacctcggacgtgtccag
aacgtgctccccagcatggaagcggcgttcatcgacatcggacgtggccgcaacggcgtt
ctctacgccggtgaggtcaactgggaggctgccggtctcggtggcaactcgcgcaagatc
gagcaggccctcaagccgggcgatcaggtgctcgttcaggtcagcaaggatccggtcggt
cacaagggtgctcgactgaccacacagatttcgcttgccggtcgtttcctcgtctacgtg
cccggtggtacgtccacgggtatcagccgcaagcttccggacaccgagcgcaagcgtctc
aaggaaatcttgcgcgacatcgttcccgccgacgccggcgtgatcattcgcacggcgtcc
gagggcgtcagcgaagaagagttggcgcgcgacgtgactcgtctgcaggctcagtgggcc
ggcatcgaggagcaggccgcggctgcggacaccggtaagtccggcaacccgcaggcgctg
tacgaagagcctgacatgctggtcaaggtcattcgcgatctgttcaacgaggacttctcc
aagctggtcatcgagggcgagaaggcgcatacgacggtcgagaactacatcaactccgtt
gcgcccgacctgcttccgcgactcgagaagtacacgccgaacaacggtatcgacgtcttc
gctgctcgccgtatcgacgagcagttggccaaggcgctcgatcgcaaggtgtggctgccg
tccggcggcaccttggtgatcgatcgcaccgaggccatgaccgtcgtcgacgtcaacacc
ggaaagttcaccggagccggcggaaacctcgaagagactgttacccgcaacaacctcgaa
gcagccgaggagatcgttcgccagatgcgcctgcgggacatcggcggaatgatcgtcgtc
gacttcatcgacatggtcctcgaatcgaaccgggacctggtcctgcgtcggctcaccgaa
tgcctgggtcgcgatcgcacgcgccatcaggtgtcggaggtcacgtcactcggactcgtg
cagatgacgcgcaagaagttgggcaccggattggtcgaggccttctcgaccacctgtgag
cactgccacggccgcggcatcatcgtccactccgagccggtcgaggtgaagtcctcggac
gacgggggatcgcgttcgggctcgcagcgaagcgaatccggcacctcgcgcaagaacaag
cgtggccgcggagacaagtcgccttcgaccgagtccaacggacaggaagctccggcgccg
gaggttccggctgtcgacgcgaccgtcaagcgggctcatccggtggcattggcgatggcc
tcgcaccaccacgacgacgacgagaccgtcgcggccggctcgatcgagtctgattccacc
ggtacgtcttcgggggatgatgcatccaaaagtgccgatcggcaacaggatcggccgatc
gatactcctgctgctactgagcgccatgacgttcctgttgtggactctgctgcggaagaa
gtatccgcagtggacaacgagtcggcggcagcttcgaccgaagcagccccgcgcggtcgt
cggcgtagtcgccgggcgtcgcgggcagcgtcggcaccggttgccgaggcagctcccgag
gtgggtacggtcttcgtgattccgactccggaacccgtggcagaaccggtcgtggaaaac
gttccggctccggccaccgaagttccggctgaggaagaagttgtcgtcgtcaagcgaccc
cgtcgcaggcgtgcagcagcacgccccgcaggtcctccggtagacggagagtaa
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