Rhizobium etli CIAT 652: RHECIAT_CH0000446
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Entry
RHECIAT_CH0000446 CDS
T00720
Symbol
rpoNch
Name
(GenBank) RNA polymerase sigma factor protein (sigma-54)
KO
K03092
RNA polymerase sigma-54 factor
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec02020
Two-component system
rec02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RHECIAT_CH0000446 (rpoNch)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RHECIAT_CH0000446 (rpoNch)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rec03021
]
RHECIAT_CH0000446 (rpoNch)
Transcription machinery [BR:
rec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RHECIAT_CH0000446 (rpoNch)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
PP_kinase_C
Motif
Other DBs
NCBI-ProteinID:
ACE89440
UniProt:
B3PZE6
LinkDB
All DBs
Position
454738..456297
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AA seq
519 aa
AA seq
DB search
MALSANLFLRQSQSLVMTPQLMQSIQLLQMTHFELNQFIAQEVEKNPLLEFPSNDGEAGD
ERGAGEDEPFGQPSEDAGSDDGADSRAEALSSDWYDNGGSESTGRLNDELDANYTNVFPD
DGGPQRLDAPELVGQWKSMPGSAEGADYDLDDFVAGQLSLRDHLAQQIPFVLPDMTDRLI
AQNFVDQLDDAGYLQTDLVETGERLGTSLEQVEHVLAALQTLDPPGVFARSLAECLAIQL
RQKDRYDPAMQALVANLELLARRDFATLKRLCGVDEEDLLDMLGEIRQLNPKPGSGFEAG
VSEAIMPDVVVRPSADGGWLVELNPDTLPRVLVNQSYFARVRGNGEDHAFLSECLQSANW
LTRSLDQRAKTIMKVASEIVRQQDAFLLNGVDHLRPLNLKTVAEAIKMHESTVSRVTSNK
YMLTPRGLFELKYFFTVSISAVEGGDSHSAEAVRHKIRALIMQESPDAVLSDDDIVDMLK
KGGIDLARRTVAKYREAMNIASSVQRRREKRALAKVAGF
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggcactgtccgccaatcttttcctgcgccagagccagtccctggtgatgacaccgcaa
ctgatgcaatccatccagttgctgcagatgacgcatttcgagctcaaccagttcatcgcc
caggaagtggaaaagaacccgctgctcgaattcccgtcgaatgacggcgaagcgggcgac
gaacggggtgccggcgaggacgagccgttcggtcagccgtcggaagacgccggctcggac
gacggcgccgatagtcgcgccgaggcgctctccagcgactggtacgacaatggcggcagc
gagagcaccggccggctgaacgacgagctcgacgccaattataccaatgtctttcccgat
gacggtggcccgcagcgcctcgatgcgccggagcttgtcggccagtggaagtcgatgccg
ggcagcgccgagggcgccgattacgatctcgacgatttcgtcgccggccagctgtcgctg
cgcgaccacctcgctcagcagatcccctttgtcctgcctgacatgaccgaccggctgatc
gcgcagaatttcgtcgatcagctcgatgatgccggctatctccagaccgatctcgtcgag
accggcgagcggctcggcacgagcctcgaacaggtcgaacacgtgctcgccgccctccag
acgctcgatccgcctggtgttttcgctcgcagcctcgccgaatgcctggcgatccagctg
aggcagaaggaccgctacgaccctgctatgcaggcgctggtcgccaatctcgaactgctg
gcgcggcgcgatttcgcaacgctgaagcggctctgcggtgtcgacgaggaagaccttctc
gacatgctcggtgagatccgccagctcaatccgaagcccggcagcggtttcgaggcgggt
gtttccgaagcgatcatgcccgatgtcgtcgtcaggccgtcggcagacggcggctggctg
gtcgagctcaatccggatacgctgccgcgcgtgctggtcaaccagtcctattttgcgcgc
gtgagagggaacggcgaggatcatgccttcctttccgagtgcctgcagagcgccaactgg
ctgacgcgcagcctcgatcagcgggcaaagaccatcatgaaggtggcaagtgagatcgtc
cgccaacaggacgccttcctgctcaacggcgtcgaccacctgcggccgctgaacctgaag
accgtggccgaggcgatcaagatgcacgaatccaccgtcagccgcgtcacctcgaacaaa
tacatgctgacgccgcgcggcctctttgagctcaaatatttcttcaccgtgtcgatcagc
gccgttgaaggcggcgacagccattcggccgaggccgtgcgccacaagatccgggcgctc
atcatgcaggagagcccggatgcggtgctctccgatgacgacatcgtcgacatgctgaaa
aaaggcggcatcgatctcgcccgccgcacggtggcgaaataccgggaagcgatgaacatc
gcctcctcggtccagcgccgccgcgagaagcgggcgctcgccaaggtcgcgggcttctga
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