Rhizobium etli CIAT 652: RHECIAT_CH0001966
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Entry
RHECIAT_CH0001966 CDS
T00720
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec03410
Base excision repair
rec03430
Mismatch repair
rec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RHECIAT_CH0001966 (recJ)
03430 Mismatch repair
RHECIAT_CH0001966 (recJ)
03440 Homologous recombination
RHECIAT_CH0001966 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rec03400
]
RHECIAT_CH0001966 (recJ)
DNA repair and recombination proteins [BR:
rec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RHECIAT_CH0001966 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RHECIAT_CH0001966 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RHECIAT_CH0001966 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ACE90932
UniProt:
B3PYK3
LinkDB
All DBs
Position
1949889..1951691
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AA seq
600 aa
AA seq
DB search
MADLVDPVQRAFLGVEKSALDNRWVARLDQAGQNRALAMSQVHGLPDLIARVLAGRGVPV
DEAIEFLDPTIRSLMPDPHTLTDCEKAATRLVSAIERGENVAIFGDYDVDGAASSALMFR
FLSHFGVKANIYIPDRIFEGYGPNPAAINQLIDNGARLIVTVDCGSTSHEALAAAAARNI
DVVVIDHHQVTHELPPCHALVNPNREDDLSGQGHLCAAGVVFMVLVATLRLLRAAGNKRI
LALDLLQWLDIVALATVCDVVPLKGLNRAYVVKGLVAARHQSNAGLAALFRKAGLAGPVT
PYHFGFLIGPRINAGGRIGDAALGSRLLTLDDAGEAELIAQRLDELNRERQAMEAMMLQE
AEAEALAEYGDGEGASVIVTAHEKWHPGIVGLIAARLKEKFKRPAFAIAFDPSGRGTGSG
RSINGFDMGRMVRAAVDEGLLVKGGGHAMAAGLTVERADLGRLRTFFTEKAARTVANLVA
NETLKIDGAIGASGATLELIDRLEAAGPYGSGHAQPLFAVPAHRVRDARLVGEKHVKVTL
EAMDGSRLDGIAFRAADTALGNLLVNSRGASLHVAGTLGADHYQGARRIQMRVCDAAPAK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggcagatctcgtcgatccggtacagcgcgcgtttctcggcgtggagaaatccgcgctc
gacaatcgctgggttgcgcggctcgatcaggccggccagaatcgggcgctcgccatgtcg
caggttcacgggctgccggatctgatcgctcgcgtcctcgccgggcgcggcgtcccggtg
gacgaggcgatcgaatttctcgatccgacgatccgcagcctgatgcccgatcctcacacg
ctgaccgactgcgagaaggcggcgacccgcctcgtgagcgcgatcgagcgcggcgaaaac
gtggcgatcttcggcgactacgacgtcgacggcgcggcctcatcggcgctgatgttccgc
tttctcagccatttcggcgtcaaggcgaacatctacattcccgatcggatctttgaaggt
tacggccccaatccggcggcgatcaaccagctgatcgacaatggagcccggctgatcgtc
accgtcgattgtggctccaccagtcacgaggcgcttgcagctgccgccgcacgcaatatc
gatgtcgtcgttatcgatcaccaccaggtgacacatgagctgccgccctgccatgcgctc
gtcaacccgaaccgcgaggacgatctctcggggcaggggcatctgtgcgcggccggcgtc
gtcttcatggtgctggtggcgacgctgagattactgcgcgcggccggcaacaagcgcatc
ctggccctcgacctgttgcaatggctggacatcgtcgcgctcgcgaccgtctgcgatgtc
gtgccgctgaaggggctcaaccgggcctatgtggtcaaggggctggtcgccgcccgtcac
cagagcaatgccgggcttgccgcactcttccgcaaggccgggctcgccggcccggtgaca
ccctatcatttcggcttcctgatcggccctcgcatcaatgccggcggacgaatcggcgat
gccgcgcttggaagccgcctgttgacgctcgacgatgccggcgaggctgaactgattgcc
cagcgcctcgacgaactcaaccgcgagcgccaggccatggaggccatgatgctgcaggag
gcggaagccgaggcgctggccgaatatggcgacggcgagggcgcctccgtcatcgtcacc
gcccacgaaaaatggcatcccggcatcgtcgggctgatcgcggcgcggctgaaggaaaag
ttcaaacggccggccttcgcgatcgccttcgatccctccggtcgcggcaccggctcgggc
cgctccatcaacggcttcgacatgggcagaatggtgcgggcggcggtcgacgaggggctg
ctcgtcaagggcggcggccacgccatggccgccgggctgaccgtcgagcgcgccgatctc
ggcaggctcagaaccttcttcaccgaaaaagcggcaaggacggtggcgaatctcgtcgcc
aacgagacgctgaagatcgacggggcgattggcgccagcggcgccacgctcgaactgatc
gaccgcctggaggcggccggcccctatggctccggccacgcccagccgctctttgccgtg
ccggcgcaccgcgtgcgcgacgcccgcctggtcggtgagaaacatgtgaaggtgacgctg
gaggcaatggacgggtcgcggctcgatggaatcgccttccgcgccgccgatacggcgctc
ggcaatcttctcgtcaattcacgcggcgcgagcctgcatgtggcgggtacgctcggcgcc
gatcattaccagggcgcccgccgcatccagatgcgcgtctgcgatgccgcgccggcaaaa
taa
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