Rhizobium etli CIAT 652: RHECIAT_CH0002145
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Entry
RHECIAT_CH0002145 CDS
T00720
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (TRCF) protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rec
Rhizobium etli CIAT 652
Pathway
rec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RHECIAT_CH0002145 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rec03400
]
RHECIAT_CH0002145 (mfd)
Enzymes [BR:
rec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHECIAT_CH0002145 (mfd)
DNA repair and recombination proteins [BR:
rec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RHECIAT_CH0002145 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACE91103
UniProt:
B3PZN8
LinkDB
All DBs
Position
2127205..2130708
Genome browser
AA seq
1167 aa
AA seq
DB search
MIPGFDAKKLAAIAEPLTIGNVPAGLEPLLLAELARTGEPVAYVMSDGHRMADLEQMLGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALGGLIAHRKKPHAAIVLVTANAMLQK
VAPHDVIESLSFSARPGNQLRMDDLAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGS
EEPVRLDFFGDTLESIRSFDPASQRTTGQGRSLDLNPMSEVTLTPDTISRFRKNYLSAFG
ATTRDDALYLAVSEGRRYPGMEHWLPFFYEKLDTVFDYLSGFRVVTDHTVREAAEERSKL
VLDYFDARLNSGQPAKGQMAQGTPYKPVAPGQLYLDSKLFAKTLDALGAIRVSPFNEIEG
EARRVVNIEARQGQRWARSNAEGGGDAERVNIFDVVVKHIADRRAGGAKVLVTAWTEGSL
ERLLQVLNEHGLEKVKPVEALKDLATLGKGEAAAAVLNLESGFEAGDLVVIGEQDILGDR
MVRRSKRRKRAADFIAEVAGLDEGSIVVHAEHGIGRFIGLKTIEAAGAPHACLELQYADE
AKLFLPVENIDLLSRYGGEGTDAQLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERLT
RHAPVLTTPDGLYDEFSARFPYDETEDQDNAIDAVRSDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFVAAMNGVQVAVVVPTTLLARQHFKTFSERFRGLPVRVQQASRLVGAKDLALTKK
EVAEGKTDIVVGTHALLGAGIKFANLGLLVIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVCP
RLADLADVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATADRRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGVDEIHDTGW
SPQISVGTTVMIPEGYVPDLHLRMALYRRLGEITELKEIDGFGAEMIDRFGPMPIEVQHL
LKIVYIKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPANLVGYIGKQGTMAKIRPDHSLF
LTRDLPTPEKRLQGAAVIMTQLAEMAK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgatccctggtttcgatgcgaagaagcttgcggccatcgccgagccgctgacgatcggc
aatgtgcctgccggcctcgaaccgctgctgctcgccgaactcgcccgcacgggagagccg
gtcgcctacgtcatgtccgacggccaccgcatggccgatctcgagcagatgctgggcttc
gtcgctccggacattccggttctgaccctgccggcctgggactgtctgccttatgaccgc
gtctcgccgagcgccgatacctcggcccgccggctggccgcactcggcggcctcatcgcc
catcggaaaaagccgcatgcggccatcgtgctcgtcaccgccaatgccatgctgcagaag
gtggcgccgcatgatgtcatcgaaagcctgagcttttcggcccgaccaggcaaccagctg
cgcatggacgatctcgccgggcgtctggagcgcaacggcttcgaccgcgtcgcgaccgtt
cgcgaggtcggcgaatatgccgtgcgcggcggcattctcgacgtcttcgtgccgggatcg
gaagagccggtccgccttgatttcttcggcgatacgctcgaatcgatccgcagcttcgat
ccggcgagccaacgcacgaccggtcaggggcgctccctcgatctcaacccgatgagcgag
gtgacgctgacgccggatacgatcagccgcttccgcaagaattacctgtcggctttcggc
gcgacgacacgtgatgacgcgctctatctcgccgtctccgaaggccgccgttaccccggc
atggagcattggctgccgttcttctacgagaagctcgataccgttttcgattatctcagc
ggcttccgagtcgtcaccgaccatacagtgcgggaggcggcggaagaacgctccaagctc
gtcctcgattatttcgacgcccgcctgaattccggccagccggccaaggggcagatggcg
cagggcacaccctacaagccggtggcgccggggcagctctacctggacagcaagcttttc
gccaaaaccctcgacgcgctcggcgcgatccgcgtcagccccttcaacgagatcgagggc
gaggcgaggcgggtcgtcaatatcgaggcccgccagggccagcgctgggcccgctcgaac
gccgaaggcggcggtgacgccgaacgcgtcaatattttcgacgtcgtcgtcaagcatatc
gccgaccggcgtgccggcggggcgaaggtcctggtaaccgcctggaccgagggttcgctg
gagcgcctgctgcaggtgctgaacgagcatggcctggaaaaggtcaagccggtcgaggcg
ctgaaagatctcgccacgctgggcaaaggcgaggcggccgccgccgtgctcaatctcgaa
tccggcttcgaggccggcgatctcgtcgtcatcggcgagcaggatattctcggcgaccgc
atggtgcgccgctccaaacgccgcaagcgcgccgccgatttcattgccgaggtcgcgggc
ctggatgaaggctcgatcgtcgtccatgccgaacacggcattggccgcttcatcgggctg
aagaccatcgaggcggcaggcgccccgcatgcctgcctcgaactgcaatatgccgatgag
gccaaactcttcctgccggtcgaaaacatcgatctgctctcgcgctacggcggcgagggc
accgacgcccagctcgacaagctcggcggcggcgcctggcagatgcgcaaggccaagctc
aagaagcggctgctcgacatggcggatgcgctgatccgcatcgccgccgagcgcctgacc
cgccacgcgccggttttgacgaccccggatgggctttacgacgagttttccgcccgcttc
ccctatgacgagaccgaggaccaggacaatgccatcgacgccgtgcgttccgatctcggc
gccggccggccgatggatcgcctggtctgcggtgacgtcggcttcggcaagacagaggtg
gcgctgcgcgccgccttcgtcgccgcgatgaacggcgtccaggttgccgtcgtcgtgccg
acgaccttgcttgcccgccagcatttcaagactttttccgagcggttccgtggcctgccg
gtgcgtgtccagcaggcctcccgtcttgtcggcgccaaggatctggcgctgaccaagaag
gaagtcgccgaaggcaagaccgatatcgtcgtcggcacgcatgcgctgctcggcgccggc
atcaaattcgccaatctcggcctgctcgtcatcgacgaagagcagcatttcggcgtcaag
cacaaggagcggctgaaggagctgaagagcgacgtgcatgtgctgacgctgtcggccacg
ccgatcccgcgcacgctgcagcttgccatgaccggggtgcgcgaactgtcgctgatcacc
acgccgccggtcgatcgcatggcggtgcgtaccttcatctcgcccttcgacagccttgtg
atccgcgagacgctgatgcgcgagcactatcgcggcggccagagtttttacgtctgccca
aggcttgccgatctcgccgatgtgcatgccttccttcagtccgatgtcccggagctgaag
gttgccgtcgcccacggccagatgccggccggcgaactggaagacatcatgaacgccttc
tatgaaggccgctacgacgtgctgttgtccacaaccatcgtcgaatccggcctcgacgtg
cccacagccaacacgctgatcgtccaccgcgccgatatgttcggcctcgcccagctctat
cagctgcgcggccgcgtcgggcgctcgaaggtgcgcgctttcgcgctcttcaccctgcct
gtcaacaaggtgctgacggcaacggccgatcgccggctgaaggtgctgcagtcgctcgac
acgctcggcgccggcttccagctggcaagccacgacctcgatattcgcggtgccggcaac
ctgctcggcgaagagcagtcgggccacatcaaggaggtcggcttcgaactctatcagcag
atgctggaagaagcggtcgccgaggtcaagggtgtcgacgagatccacgacaccggctgg
tcgccgcaaatctccgtcggcacgacggtgatgatcccggagggctatgtgcccgacctg
catctgcgcatggcgctctaccgccgtctcggcgaaatcaccgaactcaaggagatcgac
ggcttcggcgccgagatgatcgaccgtttcgggccgatgccgatcgaagttcagcatctc
ctgaagatcgtctacatcaaatcactctgccgcaccgccaatgtcgaaaagctcgatgcc
ggcccgaagggcgtcgtcgtgcagttccgcaacaaggaattccccaacccggcaaacctc
gtcggttatatcggcaagcagggcacgatggcgaagatccgccccgatcacagcctgttc
ctgacccgcgacctgccgaccccggaaaaacgcctgcagggcgctgccgtgatcatgacg
caattagccgagatggcgaagtaa
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